Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2353

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2352: 10720 - K02903 RP-L28e, RPL28 large subunit ribosomal protein L28e, at 688827 to 689561 10720 mRNA_2353: 10721 - SUPERFAMILY--SSF88713, at 689972 to 692124 10721 mRNA_2354: 10722 - K01580 E4.1.1.15, gadB, gadA, GAD glutamate decarboxylase, at 692257 to 694787 10722

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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689,196 - 10720 mRNA_2352 0.50 -1.0
689,352 - 10720 mRNA_2352 0.71 -2.9
689,489 - -2.4
689,514 - -2.5
689,515 - -2.8
689,782 + -1.0
689,785 - -2.2
689,798 - -1.2
689,802 - -0.9
690,248 + 10721 mRNA_2353 0.13 -0.5
690,260 + 10721 mRNA_2353 0.13 0.0
690,676 + 10721 mRNA_2353 0.33 -0.2
690,711 - 10721 mRNA_2353 0.34 -2.2
690,837 + 10721 mRNA_2353 0.40 -0.2
690,967 + 10721 mRNA_2353 0.46 -1.2
691,276 + 10721 mRNA_2353 0.61 -3.8
691,690 - 10721 mRNA_2353 0.80 -2.4
691,701 + 10721 mRNA_2353 0.80 -0.1
691,842 - 10721 mRNA_2353 0.87 -1.2
691,961 + 0.2
691,997 - -1.7
692,138 + -0.3
692,142 - -1.2
692,257 - 0.4
692,258 - -0.2
692,260 - -2.2
692,302 + -2.7
692,306 + -2.6
692,311 + 0.6
692,320 + -0.2
692,320 - -0.2
692,334 + -0.0
692,461 + -1.6
692,463 + -3.0
692,463 + -3.5
692,469 - -0.1
692,483 - -0.3
692,493 - -1.5
692,500 + -3.2
692,772 - 10722 mRNA_2354 0.20 -3.4
693,084 + 10722 mRNA_2354 0.33 -0.3