Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2336

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2335: 10703 - K20098 ERCC6L2 DNA excision repair protein ERCC-6-like 2, at 648018 to 653331 10703 mRNA_2336: 10704 - KOG0254 Predicted transporter (major facilitator superfamily), at 653967 to 656080 10704 mRNA_2337: 10705 - BLAST general substrate transporter [Wallemia mellicola..., at 656119 to 656520 10705

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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653,057 - -1.2
653,226 - -0.5
653,541 + -0.7
653,675 - -2.1
653,682 + -0.9
653,811 + -1.7
653,811 + -1.0
653,822 - -0.7
654,121 - -1.6
654,260 - 10704 mRNA_2336 0.14 0.2
654,536 - 10704 mRNA_2336 0.27 -3.1
654,832 - 10704 mRNA_2336 0.41 -2.0
655,016 + 10704 mRNA_2336 0.50 -3.5
655,397 - 10704 mRNA_2336 0.68 -1.5
655,696 + 10704 mRNA_2336 0.82 -0.7
655,989 + -2.7
656,032 - 0.8
656,275 + 10705 mRNA_2337 0.39 -1.8
656,277 - 10705 mRNA_2337 0.39 -1.2
656,283 + 10705 mRNA_2337 0.41 -2.2
656,284 - 10705 mRNA_2337 0.41 0.6
656,373 - 10705 mRNA_2337 0.63 1.5
656,417 - 10705 mRNA_2337 0.74 -1.5
656,417 - 10705 mRNA_2337 0.74 -0.1
656,430 + 10705 mRNA_2337 0.77 -3.5
656,430 - 10705 mRNA_2337 0.77 -1.3
656,441 + 10705 mRNA_2337 0.80 -0.7
656,474 + 10705 mRNA_2337 0.88 -2.8
656,589 + -0.3
656,589 - -2.9
656,591 - -3.0
656,606 + -0.7
656,612 + -2.7
656,626 + -1.3
656,629 - -1.7
656,629 + -1.2
656,637 - -2.0
656,663 + -1.1
656,672 + -3.9
656,672 - -1.9
656,679 - -2.1
656,682 + -0.0
656,688 + -2.2
656,724 + -3.0
656,742 + -0.8
656,755 - -4.0
656,778 - 1.7
656,791 - -1.4
656,816 - -0.5
656,816 - -2.3
656,832 + -2.7
656,856 - -1.0
656,890 - -1.9
656,899 - -1.1
656,901 - -1.6
656,921 - -2.2
656,923 - -1.3
656,923 - -1.5
656,925 - -0.2
656,930 - -2.6
656,945 + 0.0
656,960 + -1.2
656,960 - -0.5
656,961 + -0.8
656,978 + -0.6
656,978 - 1.4
656,980 - -0.6
656,987 - -2.6
656,990 + 0.1
656,992 - 0.2
656,997 - -0.7
657,029 - -3.4
657,039 + -0.6
657,067 - -0.7
657,077 + 0.5