Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2317

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2316: 10684 - K02889 RP-L21e, RPL21 large subunit ribosomal protein L21e, at 591341 to 591961 10684 mRNA_2317: 10685 - K02264 COX5A cytochrome c oxidase subunit 5a, at 592707 to 594114 10685 mRNA_2318: 10686 - HMMPfam-Bromodomain associated-PF07524,HMMPfam-Transcription factor TFIID complex subunit 8 C-term-PF10406, at 594468 to 595983 10686

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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592,167 + -0.6
592,192 - -1.1
592,196 - -0.2
592,322 + -0.6
592,615 - -1.4
592,618 + -0.4
592,624 - -1.1
592,624 + -2.6
592,626 + -2.1
592,630 - -1.9
592,642 - -2.7
592,647 - -2.2
592,658 + -1.0
592,670 - -2.1
592,970 - 10685 mRNA_2317 0.19 0.3
593,484 - 10685 mRNA_2317 0.55 -1.9
594,239 - -2.3
594,265 - 0.1
594,295 + -3.3