Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2314

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2313: 10681 - K13343 PEX14 peroxin-14, at 584223 to 585492 10681 mRNA_2314: 10682 - BLAST Valine--tRNA ligase [Rhizoctonia solani], at 585676 to 588935 10682 mRNA_2315: 10683 - SUPERFAMILY--SSF160369, at 589518 to 590435 10683

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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585,569 - -2.8
585,573 - -0.8
585,577 - -1.7
585,578 - 1.4
585,591 - -1.6
585,591 + -0.9
585,592 + -3.1
585,653 - -1.8
585,653 - -2.4
585,662 - 0.0
585,668 - -1.0
585,774 + -0.6
585,783 + -3.4
585,853 - -1.4
585,934 + -3.0
585,948 - -1.3
586,508 + 10682 mRNA_2314 0.26 -3.1
586,510 - 10682 mRNA_2314 0.26 -1.7
586,650 + 10682 mRNA_2314 0.30 -1.6
586,789 - 10682 mRNA_2314 0.34 -1.1
586,981 + 10682 mRNA_2314 0.40 -2.2
587,101 - 10682 mRNA_2314 0.44 -2.5
587,147 + 10682 mRNA_2314 0.45 0.8
587,278 + 10682 mRNA_2314 0.49 -1.2
587,356 - 10682 mRNA_2314 0.52 -1.3
587,423 - 10682 mRNA_2314 0.54 -0.4
587,696 - 10682 mRNA_2314 0.62 0.8
587,712 + 10682 mRNA_2314 0.62 -1.6
587,817 - 10682 mRNA_2314 0.66 -2.4
587,843 + 10682 mRNA_2314 0.66 -3.4
587,899 + 10682 mRNA_2314 0.68 -3.0
588,150 - 10682 mRNA_2314 0.76 -3.3
588,335 - 10682 mRNA_2314 0.82 -0.6
588,555 - 10682 mRNA_2314 0.88 -1.3
588,698 - -0.3
588,858 + -1.3
589,011 - -0.6
589,026 + -0.3
589,036 + 1.9
589,037 + -0.6
589,042 + -0.4
589,165 - -0.9
589,189 + -1.3
589,340 + -0.3
589,482 + -0.7