Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2311

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2310: 10678 - HMMPfam-AhpC/TSA antioxidant enzyme-PF13911,SUPERFAMILY--SSF52833, at 577390 to 579273 10678 mRNA_2311: 10679 - K20195 MON1 vacuolar fusion protein MON1, at 580011 to 582871 10679 mRNA_2312: 10680 - K00275 pdxH, PNPO pyridoxamine 5'-phosphate oxidase, at 583261 to 584055 10680

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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579,048 - 10678 mRNA_2310 0.88 -3.7
579,153 - 0.1
579,153 + -1.1
579,280 - -1.5
579,283 + -0.2
579,304 - 2.0
579,306 - 0.5
579,310 + -2.4
579,314 + 1.2
579,319 - -2.8
579,327 - 1.2
579,333 - -3.0
579,338 - -0.5
579,343 - 0.2
579,349 + 0.4
579,355 + -3.3
579,363 + -1.3
579,428 + -0.9
579,437 + -2.8
579,440 - -1.1
579,485 + -2.6
579,486 + -0.2
579,486 - -1.0
579,495 - -1.1
579,512 + -0.4
579,531 + 0.2
579,566 + -3.2
579,650 + 1.2
579,656 - -0.8
579,660 - -1.4
579,661 - 0.7
579,667 + -0.7
579,668 + -3.0
579,690 - -1.8
579,699 - -0.5
579,700 - -2.3
579,705 + 0.5
579,707 - -3.9
579,708 - -0.6
579,708 + -0.3
579,709 + 1.7
579,713 - 0.5
579,714 - 0.6
579,714 + -0.4
579,715 - -0.6
579,724 - -3.4
579,797 - -0.5
579,867 - -1.2
580,896 - 10679 mRNA_2311 0.31 -2.9
580,900 + 10679 mRNA_2311 0.31 -0.5
581,206 + 10679 mRNA_2311 0.42 -1.9
582,487 + 10679 mRNA_2311 0.87 1.0
582,620 - 0.8
582,789 - -2.7
582,874 + -1.3
582,918 - -2.7
582,925 - -1.2
582,928 + -2.8
582,954 + -0.7
582,954 + -2.0
583,096 - -2.8
583,115 + -0.6
583,118 - -1.2