Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2310

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2309: 10677 - K10703 PHS1, PAS2 very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase, at 575716 to 577026 10677 mRNA_2310: 10678 - HMMPfam-AhpC/TSA antioxidant enzyme-PF13911,SUPERFAMILY--SSF52833, at 577390 to 579273 10678 mRNA_2311: 10679 - K20195 MON1 vacuolar fusion protein MON1, at 580011 to 582871 10679

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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577,081 + -2.7
577,125 - -0.8
577,131 - -0.6
577,146 + -0.9
577,173 - -0.7
577,222 + -0.4
577,398 - -0.1
577,539 + -1.1
577,674 + 10678 mRNA_2310 0.15 -4.2
577,851 - 10678 mRNA_2310 0.24 -2.6
577,882 - 10678 mRNA_2310 0.26 -1.8
578,126 + 10678 mRNA_2310 0.39 -1.9
578,260 - 10678 mRNA_2310 0.46 -1.9
578,422 + 10678 mRNA_2310 0.55 0.8
578,442 + 10678 mRNA_2310 0.56 0.4
578,458 + 10678 mRNA_2310 0.57 -1.7
578,858 + 10678 mRNA_2310 0.78 0.1
579,048 - 10678 mRNA_2310 0.88 -3.7
579,153 - 0.1
579,153 + -1.1
579,280 - -1.5
579,283 + -0.2
579,304 - 2.0
579,306 - 0.5
579,310 + -2.4
579,314 + 1.2
579,319 - -2.8
579,327 - 1.2
579,333 - -3.0
579,338 - -0.5
579,343 - 0.2
579,349 + 0.4
579,355 + -3.3
579,363 + -1.3
579,428 + -0.9
579,437 + -2.8
579,440 - -1.1
579,485 + -2.6
579,486 + -0.2
579,486 - -1.0
579,495 - -1.1
579,512 + -0.4
579,531 + 0.2
579,566 + -3.2
579,650 + 1.2
579,656 - -0.8
579,660 - -1.4
579,661 - 0.7
579,667 + -0.7
579,668 + -3.0
579,690 - -1.8
579,699 - -0.5
579,700 - -2.3
579,705 + 0.5
579,707 - -3.9
579,708 - -0.6
579,708 + -0.3
579,709 + 1.7
579,713 - 0.5
579,714 - 0.6
579,714 + -0.4
579,715 - -0.6
579,724 - -3.4
579,797 - -0.5
579,867 - -1.2