Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2308

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2307: 10675 - HMMPfam-Mitochondrial ATPase inhibitor, IATP-PF04568,SUPERFAMILY--SSF64602, at 572291 to 573066 10675 mRNA_2308: 10676 - ProSiteProfiles-VWFA domain profile.-PS50234,SUPERFAMILY--SSF53300, at 573284 to 575347 10676 mRNA_2309: 10677 - K10703 PHS1, PAS2 very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase, at 575716 to 577026 10677

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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572,291 + 1.6
572,363 + -0.7
572,416 + 10675 mRNA_2307 0.16 -2.0
572,417 + 10675 mRNA_2307 0.16 -3.9
572,421 - 10675 mRNA_2307 0.17 -0.5
572,423 - 10675 mRNA_2307 0.17 -1.6
572,431 - 10675 mRNA_2307 0.18 -1.6
572,441 + 10675 mRNA_2307 0.19 -0.3
572,449 + 10675 mRNA_2307 0.20 -2.2
572,469 + 10675 mRNA_2307 0.23 1.0
572,666 - 10675 mRNA_2307 0.48 -1.4
572,800 + 10675 mRNA_2307 0.66 -0.7
572,979 - 10675 mRNA_2307 0.89 -1.2
573,011 - -0.3
573,132 + -1.7
573,138 - -2.0
573,138 + -1.2
573,178 + -1.2
573,180 - -0.7
573,181 + -2.3
573,183 + -2.0
573,189 + 0.3
573,189 + -1.0
573,192 - 0.1
573,196 - -2.1
573,198 - -0.7
573,198 + -2.1
573,199 + -2.7
573,203 - -1.0
573,206 + -2.1
573,212 + -1.2
573,214 - -0.6
573,220 - -1.6
573,230 + 0.9
573,233 + -1.9
573,236 - -0.3
573,236 + -0.5
573,248 - -0.0
573,338 - -0.6
573,346 - -2.3
573,363 + -0.5
573,373 - 0.3
573,376 + -0.6
573,487 - -0.9
573,496 - 10676 mRNA_2308 0.10 -0.0
573,501 - 10676 mRNA_2308 0.11 -2.6
573,506 - 10676 mRNA_2308 0.11 -0.8
573,519 + 10676 mRNA_2308 0.11 -2.4
573,600 - 10676 mRNA_2308 0.15 -0.5
573,665 - 10676 mRNA_2308 0.18 -1.5
574,277 - 10676 mRNA_2308 0.48 -1.9
574,332 - 10676 mRNA_2308 0.51 -3.7
574,350 - 10676 mRNA_2308 0.52 -1.7
574,364 + 10676 mRNA_2308 0.52 -1.2
574,653 - 10676 mRNA_2308 0.66 -0.4
575,206 + -0.7
575,327 - -1.7
575,368 - 0.3
575,619 + -2.7
575,652 + 0.4
575,789 - -3.0