Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2301

Experiments: 40 hrs No Buoyancy Separation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2299: 10667 - Hypothetical Protein, at 557055 to 559337 10667 mRNA_2300: 10668 - Hypothetical Protein, at 559511 to 559996 10668 mRNA_2301: 10669 - HMMPfam-Transmembrane amino acid transporter protein-PF01490, at 560287 to 562676 10669 mRNA_2302: 10670 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 563015 to 564806 10670

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
remove
559,301 - -1.2
559,407 - -0.4
559,427 + -3.1
559,440 - -0.3
559,446 - -0.1
559,600 + 10668 mRNA_2300 0.18 0.0
559,618 + 10668 mRNA_2300 0.22 -2.8
559,637 + 10668 mRNA_2300 0.26 1.1
559,743 + 10668 mRNA_2300 0.48 -1.6
559,772 - 10668 mRNA_2300 0.54 -0.5
559,806 + 10668 mRNA_2300 0.61 -3.6
559,869 - 10668 mRNA_2300 0.74 -0.5
559,885 - 10668 mRNA_2300 0.77 -1.8
559,895 - 10668 mRNA_2300 0.79 -1.7
559,901 + 10668 mRNA_2300 0.80 -1.3
559,931 + 10668 mRNA_2300 0.86 -1.7
559,936 + 10668 mRNA_2300 0.87 -1.0
559,936 + 10668 mRNA_2300 0.87 0.8
559,936 - 10668 mRNA_2300 0.87 -0.9
559,952 - 0.1
559,958 - 0.9
559,977 + -0.3
560,041 + -3.0
560,066 - -0.2
560,093 + -0.5
560,149 - 0.1
560,156 + -0.6
560,158 + -0.2
560,178 + -0.3
560,247 + -0.5
560,356 - -1.9
560,371 - 1.0
560,377 - -0.7
560,381 - -0.2
560,382 + -2.1
560,384 + 1.7
560,529 + 10669 mRNA_2301 0.10 -1.7
561,251 - 10669 mRNA_2301 0.40 -2.3
561,398 - 10669 mRNA_2301 0.46 -0.0
562,138 - 10669 mRNA_2301 0.77 -2.7
562,584 - 1.7
562,611 + -1.8
562,742 - -0.9
562,890 - 1.2
563,057 + -1.6
563,061 - -2.7
563,175 - -3.4
563,531 + 10670 mRNA_2302 0.29 -2.2