Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2253

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2252: 10620 - HMMPfam-Signal recognition particle 9 kDa protein (SRP9)-PF05486,SUPERFAMILY--SSF54762, at 468078 to 468584 10620 mRNA_2253: 10621 - HMMPfam-Staphylococcal nuclease homologue-PF00565,ProSiteProfiles-Thermonuclease domain profile.-PS50830,SMART-Staphylococcal nuclease homologues-SM00318,SUPERFAMILY--SSF50199, at 468849 to 469968 10621 mRNA_2254: 10622 - K17822 DCUN1D1_2 DCN1-like protein 1/2, at 470196 to 471391 10622

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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467,916 - 1.1
468,036 - -3.4
468,206 - 10620 mRNA_2252 0.25 -0.2
468,629 + -2.5
468,794 + 0.1
468,913 - 1.9
468,959 + -1.8
469,067 + 10621 mRNA_2253 0.19 -2.3
469,363 - 10621 mRNA_2253 0.46 -1.4
469,372 + 10621 mRNA_2253 0.47 -2.2
469,498 + 10621 mRNA_2253 0.58 -2.1
469,781 - 10621 mRNA_2253 0.83 -1.1
469,791 - 10621 mRNA_2253 0.84 -1.7
469,822 - 10621 mRNA_2253 0.87 -0.0
469,829 - 10621 mRNA_2253 0.88 -1.1
469,957 - -0.6
469,964 - -0.3
469,973 + 1.0
469,980 - -2.4
470,118 + -2.1
470,122 + -1.0
470,233 + 0.1
470,510 + 10622 mRNA_2254 0.26 -0.0
470,547 + 10622 mRNA_2254 0.29 0.3
470,552 + 10622 mRNA_2254 0.30 -1.0
470,562 - 10622 mRNA_2254 0.31 1.3
470,673 + 10622 mRNA_2254 0.40 -2.2