Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2240

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2239: 10607 - K18163 NDUFAF6 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 6, at 438330 to 439601 10607 mRNA_2240: 10608 - K13291 TUT terminal uridylyltransferase, at 440002 to 443977 10608 mRNA_2241: 10609 - K12572 PAN3 PAB-dependent poly(A)-specific ribonuclease subunit 3, at 444470 to 447596 10609

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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439,462 - 10607 mRNA_2239 0.89 -1.2
439,883 + -1.2
440,615 + 10608 mRNA_2240 0.15 -0.8
441,395 - 10608 mRNA_2240 0.35 -1.3
441,828 - 10608 mRNA_2240 0.46 -0.4
441,843 + 10608 mRNA_2240 0.46 -0.2
441,961 - 10608 mRNA_2240 0.49 -0.4
442,249 + 10608 mRNA_2240 0.57 -1.0
442,290 + 10608 mRNA_2240 0.58 -0.8
442,520 - 10608 mRNA_2240 0.63 -2.6
442,817 - 10608 mRNA_2240 0.71 -1.4
442,982 - 10608 mRNA_2240 0.75 -1.7
443,538 - 10608 mRNA_2240 0.89 -1.0
443,567 - 10608 mRNA_2240 0.90 -3.1
443,681 - -1.2
443,903 + -0.3
443,951 - -2.8
443,974 - -0.5
443,981 - -0.0
443,981 + -1.0
443,984 + -0.9
444,274 + 0.4
444,296 - -3.1
444,448 + 0.0
444,459 - -0.3
444,466 + 0.6