Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2235

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2234: 10602 - K01626 E2.5.1.54, aroF, aroG, aroH 3-deoxy-7-phosphoheptulonate synthase, at 428001 to 429735 10602 mRNA_2235: 10603 - K11843 USP14, UBP6 ubiquitin carboxyl-terminal hydrolase 14, at 430392 to 432550 10603 mRNA_2236: 10604 - KOG3098 Uncharacterized conserved protein, at 432656 to 434707 10604

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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429,483 + 10602 mRNA_2234 0.85 -1.8
429,850 + 0.7
430,135 - -1.2
430,146 - 0.2
430,150 + -0.3
430,278 + -0.7
430,279 + -1.3
430,298 + -1.7
430,299 - -1.7
430,303 - -1.9
430,314 + -3.2
430,317 + -0.5
430,504 + -2.5
430,783 - 10603 mRNA_2235 0.18 -1.2
431,008 + 10603 mRNA_2235 0.29 1.6
431,156 - 10603 mRNA_2235 0.35 -2.2
431,156 - 10603 mRNA_2235 0.35 -0.8
432,313 + 10603 mRNA_2235 0.89 -2.5
432,792 - -2.5
432,861 + -2.6
433,025 - 10604 mRNA_2236 0.18 -2.0
433,062 + 10604 mRNA_2236 0.20 -1.9