Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2227

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2226: 10594 - SMART-SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains-SM00717, at 405486 to 409218 10594 mRNA_2227: 10595 - K12392 AP1B1 AP-1 complex subunit beta-1, at 409342 to 412255 10595 mRNA_2228: 10596 - K14191 DIM1 18S rRNA (adenine1779-N6/adenine1780-N6)-dimethyltransferase, at 412387 to 413949 10596

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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409,228 - -1.2
409,239 + -1.7
409,361 - -0.8
409,364 - -1.0
409,897 + 10595 mRNA_2227 0.19 -0.0
409,919 + 10595 mRNA_2227 0.20 -2.9
410,931 - 10595 mRNA_2227 0.55 -2.0
412,306 - -0.6
412,309 + -0.7
412,315 + -0.9
412,319 + -2.4
412,335 + -1.6
412,353 - -3.8