Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2224

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2223: 10591 - Hypothetical Protein, at 398551 to 400277 10591 mRNA_2224: 10592 - KOG2653 6-phosphogluconate dehydrogenase, at 400569 to 403367 10592 mRNA_2225: 10593 - Hypothetical Protein, at 403974 to 404899 10593

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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399,666 - 10591 mRNA_2223 0.65 -0.7
399,668 + 10591 mRNA_2223 0.65 -2.1
399,677 + 10591 mRNA_2223 0.65 -2.4
399,709 - 10591 mRNA_2223 0.67 -0.9
399,818 - 10591 mRNA_2223 0.73 -1.4
399,946 - 10591 mRNA_2223 0.81 -0.4
400,269 - -1.1
400,418 + -0.5
400,568 + -2.9
400,741 - -1.2
400,819 + -0.8
400,863 + 10592 mRNA_2224 0.11 -2.5
400,958 - 10592 mRNA_2224 0.14 -2.5
400,973 + 10592 mRNA_2224 0.14 -3.1
400,986 + 10592 mRNA_2224 0.15 0.3
401,003 - 10592 mRNA_2224 0.16 0.3
401,125 - 10592 mRNA_2224 0.20 -1.9
401,137 + 10592 mRNA_2224 0.20 -0.4
401,141 - 10592 mRNA_2224 0.20 1.5
401,141 - 10592 mRNA_2224 0.20 0.5
401,209 - 10592 mRNA_2224 0.23 -2.4
401,289 + 10592 mRNA_2224 0.26 -1.2
401,290 + 10592 mRNA_2224 0.26 -1.7
401,293 + 10592 mRNA_2224 0.26 -1.9
401,303 + 10592 mRNA_2224 0.26 -2.4
401,437 - 10592 mRNA_2224 0.31 -2.0
401,464 - 10592 mRNA_2224 0.32 -2.0
401,587 - 10592 mRNA_2224 0.36 -1.7
401,612 + 10592 mRNA_2224 0.37 -0.6
401,884 + 10592 mRNA_2224 0.47 -3.2
402,216 + 10592 mRNA_2224 0.59 -0.5
402,425 + 10592 mRNA_2224 0.66 -1.2
402,591 + 10592 mRNA_2224 0.72 -0.2
402,855 - 10592 mRNA_2224 0.82 -0.8
403,168 + -1.8
403,550 - -1.5
403,574 - -2.3
403,613 - -2.6
403,709 + 1.3
403,735 + -1.1
403,736 + -1.4
403,740 + 0.9
403,743 - -2.2
403,746 + -2.0
403,753 + -1.0
403,780 - -1.5
403,843 - -0.3
403,870 + -0.6
403,870 - -2.5
403,873 - -2.9
403,876 - 0.6
403,880 - -3.8
403,900 + 0.2
403,906 + -0.4
403,908 + -0.7
403,909 + -1.7
403,911 + -2.9
403,920 - -2.7
403,922 - -3.0
403,925 + -2.1
404,054 + -0.8
404,075 - 10593 mRNA_2225 0.11 -0.9
404,088 + 10593 mRNA_2225 0.12 -1.1
404,093 + 10593 mRNA_2225 0.13 -1.8
404,197 - 10593 mRNA_2225 0.24 -1.6
404,221 + 10593 mRNA_2225 0.27 -0.9
404,223 - 10593 mRNA_2225 0.27 -1.6
404,223 - 10593 mRNA_2225 0.27 -1.4
404,339 - 10593 mRNA_2225 0.39 -2.7