Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2216

Experiments: 40 hrs No Buoyancy Separation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2215: 10583 - K01737 queD, ptpS, PTS 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase, at 379007 to 379807 10583 mRNA_2216: 10584 - BLAST Oligosaccharide translocation protein RFT1 [Termitomy..., at 380175 to 381550 10584 mRNA_2217: 10585 - KOG2199 Signal transducing adaptor protein STAM/STAM2, at 382345 to 384541 10585

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
remove
379,279 - 10583 mRNA_2215 0.34 -1.9
379,571 + 10583 mRNA_2215 0.70 0.3
379,702 - 10583 mRNA_2215 0.87 -0.8
379,815 - -1.1
379,834 - -0.3
379,838 - -1.5
380,007 + -0.3
380,024 - 0.2
380,116 - -0.7
380,116 + -2.0
380,139 + -2.7
380,290 - -0.4
380,296 - -1.5
380,586 + 10584 mRNA_2216 0.30 -1.0
380,731 - 10584 mRNA_2216 0.40 -2.4
381,142 - 10584 mRNA_2216 0.70 -0.7
381,328 + 10584 mRNA_2216 0.84 -1.0
381,456 - -0.2
381,464 + -2.7
381,468 + -2.9
381,472 - -1.9
381,472 + -2.5
381,474 + -2.6
381,482 + -2.7
381,559 - -0.7
381,586 - -1.9
381,593 - -2.0
381,595 - 1.0
381,604 + -2.4
381,612 - -2.2
381,613 + -1.8
381,614 + -2.1
381,614 + -0.9
381,618 + -2.3
381,620 + -0.9
381,624 - -1.4
381,626 + -1.3
381,626 - -3.2
381,628 + -0.3
381,628 + -0.4
381,700 + -2.2
381,703 - -0.8
381,709 - -0.8
381,709 - 1.3
381,711 + -1.9
381,716 + -1.4
381,723 + -2.1
381,725 - -3.6
381,728 + -2.5
381,729 + -0.8
381,737 - -2.8
381,740 + -1.2
381,746 + -1.0
381,746 + 0.6
381,779 + -0.9
381,783 + -0.8
381,906 + -1.4
382,005 - -0.3
382,035 - -1.6
382,430 - -0.6
382,500 - 0.7