Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2213

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2212: 10580 - K04441 P38 p38 MAP kinase, at 371280 to 373458 10580 mRNA_2213: 10581 - Hypothetical Protein, at 373795 to 375886 10581 mRNA_2214: 10582 - K06970 rlmF 23S rRNA (adenine1618-N6)-methyltransferase, at 376563 to 378868 10582

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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373,437 + -1.0
373,484 - -3.2
373,486 - -3.2
373,903 + -0.4
374,188 + 10581 mRNA_2213 0.19 -0.4
374,444 + 10581 mRNA_2213 0.31 -1.5
374,591 - 10581 mRNA_2213 0.38 -1.6
374,617 - 10581 mRNA_2213 0.39 0.3
375,000 + 10581 mRNA_2213 0.58 -0.7
375,378 + 10581 mRNA_2213 0.76 -1.0
375,619 - 10581 mRNA_2213 0.87 -1.9
375,628 + 10581 mRNA_2213 0.88 -1.1
375,768 + -1.6
375,919 + -1.2
375,931 - -2.1
375,932 - -3.7
376,030 - -2.1
376,061 - 0.8
376,069 + -0.5
376,076 - -0.9
376,090 - -1.0
376,095 - 1.2
376,095 + -0.7
376,097 - -1.9
376,098 + -1.0
376,098 + -2.7
376,111 + -2.6
376,113 + -1.2
376,132 + -3.5
376,137 + -2.2
376,154 - -0.6
376,164 + -0.5
376,169 - -2.6
376,174 + -2.5
376,180 - -2.5
376,181 - -3.1
376,186 + -0.3
376,187 - 0.0
376,188 - -2.1
376,189 - -1.7
376,189 - -2.6
376,197 - -1.8
376,200 - -1.5
376,203 + -2.1
376,207 - -1.7
376,212 + -0.7
376,222 + -0.8
376,224 + -0.3
376,229 - 0.0
376,241 - 0.6
376,253 + -0.5
376,266 - -2.0
376,269 + -0.1
376,284 + -1.7
376,299 + -0.6
376,376 - -3.1
376,391 + -1.1
376,540 - 0.3
376,542 + -2.0
376,542 + -1.9
376,545 - -2.4
376,545 + -2.9
376,555 + -1.5