Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2207

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2206: 10574 - K20465 OSBPL9_10_11, ORP9_10_11 oxysterol-binding protein-related protein 9/10/11, at 350841 to 352829 10574 mRNA_2207: 10575 - K08284 MID1 calcium channel MID1, at 353107 to 355052 10575 mRNA_2208: 10576 - K13621 BTA1 betaine lipid synthase, at 355291 to 358512 10576

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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352,263 - 10574 mRNA_2206 0.71 -2.5
352,284 + 10574 mRNA_2206 0.73 -1.1
352,440 + 10574 mRNA_2206 0.80 -2.2
352,565 - 10574 mRNA_2206 0.87 -0.4
352,566 + 10574 mRNA_2206 0.87 -1.7
352,571 + 10574 mRNA_2206 0.87 -0.3
352,818 + -3.2
352,851 + 0.6
353,002 + 0.8
353,002 + -2.9
353,025 - -0.4
353,037 - -1.0
353,046 + -2.9
353,065 + -0.7
353,325 + 10575 mRNA_2207 0.11 -0.6
353,328 + 10575 mRNA_2207 0.11 -1.2
353,346 - 10575 mRNA_2207 0.12 -2.2
353,599 - 10575 mRNA_2207 0.25 0.5
353,755 + 10575 mRNA_2207 0.33 -3.0
353,755 - 10575 mRNA_2207 0.33 -1.0
353,915 + 10575 mRNA_2207 0.42 -2.2
353,917 - 10575 mRNA_2207 0.42 -1.0
354,021 + 10575 mRNA_2207 0.47 -2.7
354,382 - 10575 mRNA_2207 0.66 -2.8
354,656 - 10575 mRNA_2207 0.80 -2.3
354,681 - 10575 mRNA_2207 0.81 -0.3
354,919 - -3.5
354,950 - 1.2
355,085 + 1.3
355,199 + -0.8
355,215 - -1.9
355,429 - -1.6
355,655 - 10576 mRNA_2208 0.11 -2.4
355,946 - 10576 mRNA_2208 0.20 -2.2
356,007 + 10576 mRNA_2208 0.22 0.1