Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2200

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2199: 10567 - K05724 FGD5_6 FYVE, RhoGEF and PH domain containing 5/6, at 331928 to 335323 10567 mRNA_2200: 10568 - K11423 SETD2, SET2 histone-lysine N-methyltransferase SETD2, at 335567 to 339379 10568 mRNA_2201: 10569 - K03005 RPA49, POLR1E DNA-directed RNA polymerase I subunit RPA49, at 339616 to 341199 10569

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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334,646 - 10567 mRNA_2199 0.80 -0.1
334,780 - 10567 mRNA_2199 0.84 -1.0
334,787 + 10567 mRNA_2199 0.84 -1.9
334,873 - 10567 mRNA_2199 0.87 -3.0
335,229 - -2.6
335,254 + -0.6
335,746 + -2.8
336,171 - 10568 mRNA_2200 0.16 -2.0
338,832 + 10568 mRNA_2200 0.86 -0.3
339,140 - 0.2
339,277 + -0.5
339,409 + -1.5
339,435 + -1.9
339,441 + -0.5
339,445 + -2.0
339,455 - -0.3
339,539 + -2.1
339,553 - -1.2
339,577 - -2.9
339,585 + -2.0
339,700 - -2.0
339,700 + -3.2
339,716 - -1.5
339,719 + 1.8
339,727 - -1.0
339,881 - 10569 mRNA_2201 0.17 0.9
339,897 + 10569 mRNA_2201 0.18 -3.3
339,911 + 10569 mRNA_2201 0.19 2.0
340,147 - 10569 mRNA_2201 0.34 -2.2