Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2199

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2198: 10566 - Hypothetical Protein, at 330686 to 331336 10566 mRNA_2199: 10567 - K05724 FGD5_6 FYVE, RhoGEF and PH domain containing 5/6, at 331928 to 335323 10567 mRNA_2200: 10568 - K11423 SETD2, SET2 histone-lysine N-methyltransferase SETD2, at 335567 to 339379 10568

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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331,495 + -1.6
331,812 - -1.7
332,053 - -3.8
332,206 + 0.0
332,244 + -0.8
332,448 - 10567 mRNA_2199 0.15 -1.7
332,467 - 10567 mRNA_2199 0.16 -1.2
332,612 + 10567 mRNA_2199 0.20 -0.7
332,616 - 10567 mRNA_2199 0.20 -2.6
332,776 - 10567 mRNA_2199 0.25 -1.1
332,795 - 10567 mRNA_2199 0.26 -0.2
332,802 + 10567 mRNA_2199 0.26 -1.8
332,811 - 10567 mRNA_2199 0.26 -2.5
332,881 - 10567 mRNA_2199 0.28 -0.3
332,887 - 10567 mRNA_2199 0.28 -4.1
332,918 - 10567 mRNA_2199 0.29 2.2
332,965 + 10567 mRNA_2199 0.31 -0.4
333,012 - 10567 mRNA_2199 0.32 0.1
333,070 - 10567 mRNA_2199 0.34 -0.7
333,099 - 10567 mRNA_2199 0.34 -0.5
333,111 + 10567 mRNA_2199 0.35 -2.5
333,183 + 10567 mRNA_2199 0.37 -2.3
333,213 - 10567 mRNA_2199 0.38 -2.7
333,225 - 10567 mRNA_2199 0.38 -2.1
333,259 + 10567 mRNA_2199 0.39 -1.1
333,295 - 10567 mRNA_2199 0.40 -0.0
333,370 + 10567 mRNA_2199 0.42 -1.7
333,378 + 10567 mRNA_2199 0.43 -1.8
333,530 - 10567 mRNA_2199 0.47 -1.0
333,556 - 10567 mRNA_2199 0.48 -2.6
333,654 - 10567 mRNA_2199 0.51 -0.8
333,671 + 10567 mRNA_2199 0.51 0.0
333,774 + 10567 mRNA_2199 0.54 -1.7
333,816 - 10567 mRNA_2199 0.56 -1.9
333,980 - 10567 mRNA_2199 0.60 -2.4
334,154 + 10567 mRNA_2199 0.66 -2.5
334,248 - 10567 mRNA_2199 0.68 0.8
334,498 + 10567 mRNA_2199 0.76 -0.7
334,501 - 10567 mRNA_2199 0.76 -1.6
334,540 + 10567 mRNA_2199 0.77 0.1
334,646 - 10567 mRNA_2199 0.80 -0.1
334,780 - 10567 mRNA_2199 0.84 -1.0
334,787 + 10567 mRNA_2199 0.84 -1.9
334,873 - 10567 mRNA_2199 0.87 -3.0
335,229 - -2.6
335,254 + -0.6
335,746 + -2.8
336,171 - 10568 mRNA_2200 0.16 -2.0