Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2197

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2196: 10564 - HMMPfam-Bromodomain associated-PF07524, at 323325 to 326120 10564 mRNA_2197: 10565 - K20042 FCHO F-BAR domain only protein, at 326896 to 330044 10565 mRNA_2198: 10566 - Hypothetical Protein, at 330686 to 331336 10566

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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326,217 - 1.1
326,238 + -0.5
326,337 + 1.1
326,354 - -1.5
326,359 - -1.3
326,373 - -1.0
326,388 - -0.3
326,511 + -0.7
326,513 + -0.1
326,515 - -2.4
326,516 + -2.8
326,520 + -2.3
326,521 - -2.0
326,522 - -2.6
326,522 + -2.1
326,648 + -1.3
326,654 - 0.7
326,659 - 0.2
326,933 - -2.5
326,979 + -0.5
327,001 + -0.4
327,560 - 10565 mRNA_2197 0.21 -2.0
328,110 + 10565 mRNA_2197 0.39 -1.2
328,355 + 10565 mRNA_2197 0.46 -1.5
328,427 + 10565 mRNA_2197 0.49 -1.6
328,574 + 10565 mRNA_2197 0.53 -1.7
328,986 + 10565 mRNA_2197 0.66 -1.9
329,014 - 10565 mRNA_2197 0.67 -2.8
329,111 - 10565 mRNA_2197 0.70 -0.6
329,735 + -2.0
329,863 - -1.2
330,001 - 0.1
330,433 - -1.9
330,435 - -1.4
330,440 + -2.1
330,601 - -0.5
330,766 - 10566 mRNA_2198 0.12 -0.6
330,916 - 10566 mRNA_2198 0.35 -1.4