Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2185

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2184: 10552 - Hypothetical Protein, at 286236 to 287917 10552 mRNA_2185: 10553 - HMMPfam-Copper fist DNA binding domain-PF00649,PRINTS-Copper fist domain signature-PR00617,ProSiteProfiles-Copper-fist DNA-binding domain profile.-PS50073,SMART-Copper-Fist-SM00412,SMART--SM01090,SUPERFAMILY--SSF57879, at 288686 to 288844 10553

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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288,160 - -1.8
288,421 + -0.3
288,477 - -0.7
288,484 + -1.7
288,546 + -1.4
288,557 - 0.0
288,561 - -0.5
288,568 + -2.0
288,591 + -1.6
288,622 + -1.0
288,626 - 0.2
288,632 + -3.5
288,640 + -2.2
288,652 + -1.5
288,669 + -1.0
288,716 - 10553 mRNA_2185 0.19 -1.7
288,717 - 10553 mRNA_2185 0.19 -0.9
288,733 + 10553 mRNA_2185 0.30 -1.7
288,784 - 10553 mRNA_2185 0.62 -1.2
288,883 - 0.6
288,891 + -1.5
288,919 + -0.7
289,047 + -1.6
289,195 - 2.5
289,201 - -0.5
289,214 + 1.1
289,220 - -1.7
289,224 - 0.1
289,334 - -1.2
289,353 - -0.6
289,354 + 1.5
289,363 + -3.0
289,368 + 0.2
289,371 + -1.9
289,375 + 0.4
289,471 - -0.9
289,473 + -0.7
289,502 - -2.6
289,625 - -1.9
289,649 + -2.3
289,810 - -0.1