Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2164

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2163: 10531 - K18468 VPS35 vacuolar protein sorting-associated protein 35, at 226223 to 229992 10531 mRNA_2164: 10532 - K10736 MCM10 minichromosome maintenance protein 10, at 230193 to 233259 10532 mRNA_2165: 10533 - Hypothetical Protein, at 233429 to 233973 10533

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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230,256 - -2.0
230,306 + -1.1
230,563 - 10532 mRNA_2164 0.12 -0.3
230,634 + 10532 mRNA_2164 0.14 -2.2
230,657 - 10532 mRNA_2164 0.15 -0.9
233,312 - -1.7
233,317 - -4.1
233,337 + 0.6
233,342 + -1.2
233,344 - -0.3
233,351 - -2.6
233,354 - -2.8
233,357 + -0.3
233,358 + 0.0
233,359 - -1.2
233,369 + 0.7
233,369 + -1.3
233,372 - -0.5
233,375 + -1.3
233,447 - -3.0
233,487 - 10533 mRNA_2165 0.11 -1.7
233,499 - 10533 mRNA_2165 0.13 -1.3
233,525 - 10533 mRNA_2165 0.18 -2.2
233,529 + 10533 mRNA_2165 0.18 -0.4
233,624 + 10533 mRNA_2165 0.36 -0.4
233,636 - 10533 mRNA_2165 0.38 -1.1
233,667 - 10533 mRNA_2165 0.44 -2.8
233,686 - 10533 mRNA_2165 0.47 -0.2
233,691 + 10533 mRNA_2165 0.48 -3.2
233,731 + 10533 mRNA_2165 0.55 0.7
233,793 - 10533 mRNA_2165 0.67 -1.0
233,803 + 10533 mRNA_2165 0.69 -2.2
234,097 + 0.0
234,099 - -1.2
234,115 + -1.5
234,188 - -0.8