Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2144

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2143: 10511 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 180912 to 181824 10511 mRNA_2144: 10512 - Hypothetical Protein, at 182114 to 183256 10512 mRNA_2145: 10513 - HMMPfam-Protein of unknown function DUF89-PF01937,SUPERFAMILY--SSF111321, at 183733 to 185513 10513

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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181,178 - 10511 mRNA_2143 0.29 -2.1
181,179 - 10511 mRNA_2143 0.29 -0.8
181,185 + 10511 mRNA_2143 0.30 -0.0
181,197 - 10511 mRNA_2143 0.31 -1.3
181,215 - 10511 mRNA_2143 0.33 -0.6
181,254 - 10511 mRNA_2143 0.37 -1.3
181,309 + 10511 mRNA_2143 0.43 -1.0
181,315 + 10511 mRNA_2143 0.44 0.5
181,323 + 10511 mRNA_2143 0.45 -0.5
181,332 - 10511 mRNA_2143 0.46 -1.4
181,394 - 10511 mRNA_2143 0.53 -0.4
181,587 - 10511 mRNA_2143 0.74 0.5
181,617 + 10511 mRNA_2143 0.77 -0.8
181,696 + 10511 mRNA_2143 0.86 -3.1
182,048 - -0.7
182,070 - -1.6
182,077 + 1.6
182,090 - -1.3
182,129 - -1.9
182,285 - 10512 mRNA_2144 0.15 -0.8
182,316 + 10512 mRNA_2144 0.18 -1.0
182,396 - 10512 mRNA_2144 0.25 -1.0
182,405 - 10512 mRNA_2144 0.25 -1.0
182,500 - 10512 mRNA_2144 0.34 0.3
182,665 + 10512 mRNA_2144 0.48 0.2
182,665 + 10512 mRNA_2144 0.48 -1.7
182,665 + 10512 mRNA_2144 0.48 -1.4
182,710 + 10512 mRNA_2144 0.52 -1.4
182,847 + 10512 mRNA_2144 0.64 -0.6
182,850 - 10512 mRNA_2144 0.64 0.4
182,851 - 10512 mRNA_2144 0.64 -0.6
183,008 + 10512 mRNA_2144 0.78 -0.8
183,220 - -2.0
183,220 + -1.2
183,308 + -2.3
183,311 - -3.4
183,312 + -0.3
183,315 - -2.7
183,407 - -0.7
183,500 - -0.4
183,565 - 2.1
183,582 - 0.6
183,701 - 0.1
183,741 - -1.8
183,743 + 0.1
183,757 - -2.7
183,806 + 1.2
183,809 - -2.2
183,815 + -1.2
183,904 - -0.3
183,970 + 10513 mRNA_2145 0.13 -2.0
183,972 - 10513 mRNA_2145 0.13 -0.3
184,009 + 10513 mRNA_2145 0.15 0.9
184,015 - 10513 mRNA_2145 0.16 -0.0
184,027 + 10513 mRNA_2145 0.17 -1.0
184,074 - 10513 mRNA_2145 0.19 -1.9
184,140 + 10513 mRNA_2145 0.23 -0.1
184,146 + 10513 mRNA_2145 0.23 -1.8
184,192 + 10513 mRNA_2145 0.26 2.5
184,254 + 10513 mRNA_2145 0.29 -1.4