Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2140

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2139: 10507 - K09377 CSRP cysteine and glycine-rich protein, at 161377 to 162483 10507 mRNA_2140: 10508 - HMMPfam-F-box domain-PF00646,HMMPfam-Domain of unknown function (DUF1708)-PF08101,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF48350,SUPERFAMILY--SSF81383, at 162925 to 174925 10508 mRNA_2141: 10509 - SUPERFAMILY--SSF52047, at 175857 to 177524 10509

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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162,252 - 10507 mRNA_2139 0.79 -0.5
162,338 - 10507 mRNA_2139 0.87 -1.9
162,894 - 0.1
163,472 + -1.9
163,555 - -0.7
163,779 - 0.3
163,807 - -1.3
163,980 + -2.5
164,585 - 10508 mRNA_2140 0.14 -2.1
164,841 + 10508 mRNA_2140 0.16 -1.0
165,110 - 10508 mRNA_2140 0.18 -0.3
165,110 - 10508 mRNA_2140 0.18 -0.4
165,110 - 10508 mRNA_2140 0.18 -1.8
165,145 + 10508 mRNA_2140 0.18 -1.9
165,319 + 10508 mRNA_2140 0.20 -1.0
165,614 + 10508 mRNA_2140 0.22 -2.0
165,776 + 10508 mRNA_2140 0.24 -1.9
165,904 + 10508 mRNA_2140 0.25 -1.2
166,194 + 10508 mRNA_2140 0.27 -2.5
166,194 - 10508 mRNA_2140 0.27 -0.8
166,197 - 10508 mRNA_2140 0.27 0.2
166,272 + 10508 mRNA_2140 0.28 0.6
166,491 + 10508 mRNA_2140 0.30 -1.0
166,652 + 10508 mRNA_2140 0.31 -0.0
166,896 + 10508 mRNA_2140 0.33 -1.6
167,275 - 10508 mRNA_2140 0.36 -1.3
167,312 - 10508 mRNA_2140 0.37 1.5
167,392 + 10508 mRNA_2140 0.37 -1.9
167,402 + 10508 mRNA_2140 0.37 -1.9
167,483 - 10508 mRNA_2140 0.38 -0.2
167,579 + 10508 mRNA_2140 0.39 0.3
167,711 - 10508 mRNA_2140 0.40 -2.3
167,711 - 10508 mRNA_2140 0.40 1.7
167,732 + 10508 mRNA_2140 0.40 -0.2
167,867 - 10508 mRNA_2140 0.41 0.2
167,883 - 10508 mRNA_2140 0.41 -0.8
167,989 - 10508 mRNA_2140 0.42 -3.9
168,031 + 10508 mRNA_2140 0.43 -1.3
168,186 + 10508 mRNA_2140 0.44 -1.7
168,499 + 10508 mRNA_2140 0.46 -0.2
168,552 - 10508 mRNA_2140 0.47 -0.8
169,160 + 10508 mRNA_2140 0.52 2.6
169,189 + 10508 mRNA_2140 0.52 0.0
169,340 - 10508 mRNA_2140 0.53 -0.0
169,352 + 10508 mRNA_2140 0.54 0.1
169,614 - 10508 mRNA_2140 0.56 -2.0
169,625 + 10508 mRNA_2140 0.56 0.1
169,890 - 10508 mRNA_2140 0.58 -2.5
169,925 - 10508 mRNA_2140 0.58 -1.3
170,046 + 10508 mRNA_2140 0.59 -1.4
170,318 + 10508 mRNA_2140 0.62 -1.9
170,330 + 10508 mRNA_2140 0.62 -3.3
170,740 - 10508 mRNA_2140 0.65 -1.6
170,811 - 10508 mRNA_2140 0.66 -0.7
171,257 - 10508 mRNA_2140 0.69 -2.0
171,320 + 10508 mRNA_2140 0.70 0.7
171,537 - 10508 mRNA_2140 0.72 -1.7
171,648 - 10508 mRNA_2140 0.73 -0.5
171,924 - 10508 mRNA_2140 0.75 -2.6
172,010 + 10508 mRNA_2140 0.76 -0.7
172,136 - 10508 mRNA_2140 0.77 -0.9
172,187 - 10508 mRNA_2140 0.77 -3.0
172,192 - 10508 mRNA_2140 0.77 -2.3
172,205 + 10508 mRNA_2140 0.77 -3.0
172,411 - 10508 mRNA_2140 0.79 1.5
172,527 + 10508 mRNA_2140 0.80 -1.2
172,764 - 10508 mRNA_2140 0.82 -0.7
172,983 - 10508 mRNA_2140 0.84 -0.0
173,030 + 10508 mRNA_2140 0.84 -2.0
173,113 + 10508 mRNA_2140 0.85 -2.7
173,452 - 10508 mRNA_2140 0.88 0.1
173,469 + 10508 mRNA_2140 0.88 -3.0
173,687 - 10508 mRNA_2140 0.90 -2.9
173,773 - -1.8
173,930 - -2.7
174,050 + -1.0
174,157 - -1.2
174,330 - -2.8
174,606 - -3.3
174,874 + -1.9
175,184 + -1.8
175,216 - -0.5
175,301 + -0.5
175,342 + -1.2
175,351 + -0.6
175,444 - 0.6
175,477 + -3.7
175,477 - -3.0
175,498 + -0.9
175,499 + -2.3
175,609 + -1.7
175,617 - -1.7
175,629 - 0.6
175,639 + 1.2
175,771 - 0.1
175,791 - 0.2
175,921 + -0.2