Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2137

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2136: 10504 - K01613 psd, PISD phosphatidylserine decarboxylase, at 153030 to 154707 10504 mRNA_2137: 10505 - Hypothetical Protein, at 155364 to 157707 10505 mRNA_2138: 10506 - HMMPfam-Putative stress-responsive nuclear envelope protein-PF10281, at 157835 to 161101 10506

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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154,391 - 10504 mRNA_2136 0.81 -2.4
154,446 - 10504 mRNA_2136 0.84 -1.8
154,688 - -0.6
154,839 - 1.4
155,435 + 0.2
155,436 - 0.2
155,442 + -3.6
155,451 - -1.8
155,562 - -1.7
155,717 + 10505 mRNA_2137 0.15 1.3
155,975 + 10505 mRNA_2137 0.26 -2.1
156,185 + 10505 mRNA_2137 0.35 -1.9
156,307 + 10505 mRNA_2137 0.40 -0.4
156,330 - 10505 mRNA_2137 0.41 -0.7
156,485 - 10505 mRNA_2137 0.48 -0.3
156,821 - 10505 mRNA_2137 0.62 -1.1
156,977 + 10505 mRNA_2137 0.69 -0.8
157,248 + 10505 mRNA_2137 0.80 -4.1
157,542 + -0.6
157,816 + 0.1
157,830 - -0.5
157,835 - -1.9
157,960 - -2.0
158,134 + -0.5
158,137 + -1.2
158,156 - -3.5
158,446 + 10506 mRNA_2138 0.19 -1.2
158,534 - 10506 mRNA_2138 0.21 -0.5
158,604 + 10506 mRNA_2138 0.24 0.1
158,626 + 10506 mRNA_2138 0.24 -1.1