Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2132

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2131: 10499 - K09580 PDIA1, P4HB protein disulfide-isomerase A1, at 141323 to 143619 10499 mRNA_2132: 10500 - Hypothetical Protein, at 144026 to 145888 10500 mRNA_2133: 10501 - ProSitePatterns-Zinc finger RanBP2-type signature.-PS01358,ProSiteProfiles-Zinc finger RanBP2 type profile.-PS50199,SMART-Zinc finger domain-SM00547,SUPERFAMILY--SSF90209, at 146345 to 148532 10501

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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143,345 - 10499 mRNA_2131 0.88 -1.9
143,404 - 1.5
143,629 + 0.1
143,660 - -0.9
143,682 + -2.9
143,690 + 0.5
143,754 - -1.8
143,816 - -1.4
143,824 - 1.1
143,825 + -1.5
143,835 - -3.0
143,843 + -2.9
143,844 + 0.8
143,916 - -2.1
143,961 - -3.1
143,966 + -2.5
144,074 - -3.9
144,099 - -0.0
144,099 + 1.2
144,105 - -2.3
144,112 - -0.4
144,571 - 10500 mRNA_2132 0.29 0.9
145,191 + 10500 mRNA_2132 0.63 0.4
145,193 - 10500 mRNA_2132 0.63 0.3
145,269 - 10500 mRNA_2132 0.67 -2.1
145,280 + 10500 mRNA_2132 0.67 -1.4
145,463 - 10500 mRNA_2132 0.77 -1.6
146,535 - -1.2