Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2122

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2122: 10490 - K00103 GULO L-gulonolactone oxidase, at 124559 to 126866 10490 mRNA_2123: 10491 - HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,SUPERFAMILY--SSF50685, at 127215 to 128574 10491

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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123,682 - -3.6
123,717 - 0.3
124,108 + -0.3
124,117 - -1.9
124,255 + 0.0
124,265 + -1.7
124,279 - -1.1
124,381 + -1.0
124,390 + -2.6
124,393 - -1.8
124,414 + -0.4
124,417 - -1.9
124,419 + -2.5
124,421 + -1.0
124,422 + -2.9
124,423 + -1.6
124,448 - -0.4
124,448 - 0.5
124,456 + -2.1
124,468 + -0.1
124,470 - -0.7
124,474 - -1.7
124,479 + -1.9
124,488 - -1.1
124,621 - 0.6
124,633 + 1.2
124,641 + -1.6
124,804 + 10490 mRNA_2122 0.11 -2.8
124,806 + 10490 mRNA_2122 0.11 -2.2
125,280 - 10490 mRNA_2122 0.31 -2.5
125,792 + 10490 mRNA_2122 0.53 -0.3
125,935 - 10490 mRNA_2122 0.60 -1.5
126,270 - 10490 mRNA_2122 0.74 -1.0
126,440 + 10490 mRNA_2122 0.81 -3.0
126,861 + -2.7
126,861 - 0.7
127,144 - -1.8
127,149 + 0.2
127,273 - -1.4
127,582 - 10491 mRNA_2123 0.27 -2.7
127,696 - 10491 mRNA_2123 0.35 0.0
127,782 + 10491 mRNA_2123 0.42 -1.5
127,865 - 10491 mRNA_2123 0.48 -1.2