Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2120

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2119: 10487 - HMMPfam-Taurine catabolism dioxygenase TauD, TfdA family-PF02668,SUPERFAMILY--SSF51197, at 117592 to 119082 10487 mRNA_2120: 10488 - Hypothetical Protein, at 119780 to 121101 10488 mRNA_2121: 10489 - K17991 PXG peroxygenase, at 121585 to 123428 10489

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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118,836 - 10487 mRNA_2119 0.83 -1.0
118,938 - -2.1
119,571 + 0.6
120,046 + 10488 mRNA_2120 0.20 -2.0
120,363 + 10488 mRNA_2120 0.44 0.8
120,475 + 10488 mRNA_2120 0.53 -1.8
120,484 - 10488 mRNA_2120 0.53 -0.9
120,484 + 10488 mRNA_2120 0.53 -1.5
120,497 + 10488 mRNA_2120 0.54 -1.5
120,514 - 10488 mRNA_2120 0.56 1.3
120,636 - 10488 mRNA_2120 0.65 -1.9
120,766 + 10488 mRNA_2120 0.75 -1.5
120,781 - 10488 mRNA_2120 0.76 -1.7
120,785 - 10488 mRNA_2120 0.76 -1.6
120,786 + 10488 mRNA_2120 0.76 -1.7
120,790 + 10488 mRNA_2120 0.76 -3.8
120,795 - 10488 mRNA_2120 0.77 -0.3
120,798 - 10488 mRNA_2120 0.77 -0.6
120,798 + 10488 mRNA_2120 0.77 -0.9
120,799 - 10488 mRNA_2120 0.77 -0.9
120,799 - 10488 mRNA_2120 0.77 -2.3
120,803 + 10488 mRNA_2120 0.77 -2.3
120,805 - 10488 mRNA_2120 0.78 -1.1
120,806 + 10488 mRNA_2120 0.78 -0.8
120,807 - 10488 mRNA_2120 0.78 -0.9
120,808 + 10488 mRNA_2120 0.78 -0.6
120,810 + 10488 mRNA_2120 0.78 -1.0
121,088 + -2.7
121,091 + -1.5
121,202 + -1.0
121,231 - -0.6
121,238 + -3.6
121,263 + 0.0
121,354 + 0.3
121,555 - -1.3
121,676 + -1.9
121,686 + -0.0
121,708 - -2.6
121,714 - -2.9
121,835 - 10489 mRNA_2121 0.14 -1.8
121,982 + 10489 mRNA_2121 0.22 -0.3