Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2117

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2116: 10484 - K01184 E3.2.1.15 polygalacturonase, at 110471 to 111882 10484 mRNA_2117: 10485 - Hypothetical Protein, at 112509 to 114471 10485 mRNA_2118: 10486 - KOG0254 Predicted transporter (major facilitator superfamily), at 114569 to 117029 10486

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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111,526 + 10484 mRNA_2116 0.75 -2.5
111,572 - 10484 mRNA_2116 0.78 -1.6
111,636 - 10484 mRNA_2116 0.83 -1.3
111,640 - 10484 mRNA_2116 0.83 -0.5
111,649 - 10484 mRNA_2116 0.83 -2.2
111,668 - 10484 mRNA_2116 0.85 -2.7
111,691 + 10484 mRNA_2116 0.86 -3.1
111,726 - 10484 mRNA_2116 0.89 -3.1
111,809 - 1.1
112,069 - -0.2
112,087 + -2.2
112,128 - -1.6
112,305 + -0.4
112,306 - 2.0
112,380 - -0.4
112,382 + 0.3
112,384 - -3.8
112,410 - -0.5
112,414 + -2.1
112,435 - -0.1
112,529 - -1.5
112,543 - -1.7
112,649 - -1.7
112,676 - 0.3
112,696 - -1.7
112,954 - 10485 mRNA_2117 0.23 -1.0
113,039 + 10485 mRNA_2117 0.27 -0.9
113,114 + 10485 mRNA_2117 0.31 -3.5
113,139 + 10485 mRNA_2117 0.32 -4.2
113,234 + 10485 mRNA_2117 0.37 -0.5
114,004 + 10485 mRNA_2117 0.76 -1.1
114,196 - 10485 mRNA_2117 0.86 -0.8
114,203 + 10485 mRNA_2117 0.86 -0.2
114,206 - 10485 mRNA_2117 0.86 -0.0
114,433 + -0.1
114,465 - -2.4
114,471 + -2.0
114,575 - -0.7
114,581 - -0.6
114,626 - 0.1
114,677 + -0.3
114,711 - 0.1
114,857 - 10486 mRNA_2118 0.12 -1.6
114,893 + 10486 mRNA_2118 0.13 -2.5
115,108 + 10486 mRNA_2118 0.22 -1.9
115,414 + 10486 mRNA_2118 0.34 -3.5
115,415 + 10486 mRNA_2118 0.34 -1.5