Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2115

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2114: 10482 - K10768 ALKBH6 alkylated DNA repair protein alkB homolog 6, at 105978 to 107393 10482 mRNA_2115: 10483 - BLAST integral membrane protein [Stemphylium lycopersici], at 107556 to 109708 10483 mRNA_2116: 10484 - K01184 E3.2.1.15 polygalacturonase, at 110471 to 111882 10484

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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106,645 + 10482 mRNA_2114 0.47 1.3
106,656 - 10482 mRNA_2114 0.48 -0.8
106,725 + 10482 mRNA_2114 0.53 -1.5
106,810 + 10482 mRNA_2114 0.59 -1.7
106,969 + 10482 mRNA_2114 0.70 -2.9
106,972 + 10482 mRNA_2114 0.70 -0.3
107,095 - 10482 mRNA_2114 0.79 -0.7
107,103 - 10482 mRNA_2114 0.79 -0.0
107,117 + 10482 mRNA_2114 0.80 -1.2
107,304 + -0.5
107,421 - 0.2
107,423 + 1.0
107,423 + -1.3
107,436 + -4.1
107,438 - -2.2
107,444 + -0.8
107,490 - -2.6
107,562 - 0.4
107,577 - 0.6
107,580 - 0.0
107,591 - -1.1
107,627 + -0.8
107,992 - 10483 mRNA_2115 0.20 -0.9
108,029 + 10483 mRNA_2115 0.22 -4.1
108,040 + 10483 mRNA_2115 0.22 -0.4
108,082 + 10483 mRNA_2115 0.24 -0.6
108,157 - 10483 mRNA_2115 0.28 -1.8
108,176 - 10483 mRNA_2115 0.29 -0.8
108,208 - 10483 mRNA_2115 0.30 -2.0
108,314 + 10483 mRNA_2115 0.35 -1.4
108,581 + 10483 mRNA_2115 0.48 -1.7
108,615 + 10483 mRNA_2115 0.49 -0.2
108,674 - 10483 mRNA_2115 0.52 -2.5
108,805 + 10483 mRNA_2115 0.58 -2.2
108,856 - 10483 mRNA_2115 0.60 -3.4
108,862 + 10483 mRNA_2115 0.61 -0.8
109,303 + 10483 mRNA_2115 0.81 -0.2
109,350 - 10483 mRNA_2115 0.83 0.3
109,351 + 10483 mRNA_2115 0.83 0.2
109,374 - 10483 mRNA_2115 0.84 -2.2
109,374 - 10483 mRNA_2115 0.84 -1.8
109,386 - 10483 mRNA_2115 0.85 0.3
109,394 - 10483 mRNA_2115 0.85 -0.4
109,434 + 10483 mRNA_2115 0.87 -0.3
109,492 - 10483 mRNA_2115 0.90 0.0
109,611 + -1.7
109,760 + 0.4
109,901 - -1.2
109,911 - 0.6
109,911 - -1.1
109,974 + -0.6
110,172 + -0.4
110,241 - -0.3
110,480 + -3.7
110,580 + -0.9
110,676 + 10484 mRNA_2116 0.15 -0.9