Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2110

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2109: 10477 - SUPERFAMILY--SSF56112, at 98028 to 98739 10477 mRNA_2110: 10478 - K10277 KDM8, JMJD5 lysine-specific demethylase 8, at 99075 to 100834 10478 mRNA_2111: 10479 - K10575 UBE2G1, UBC7 ubiquitin-conjugating enzyme E2 G1, at 101300 to 102530 10479

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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98,142 - 10477 mRNA_2109 0.16 -1.8
98,475 - 10477 mRNA_2109 0.63 -1.8
98,479 - 10477 mRNA_2109 0.63 0.2
98,479 + 10477 mRNA_2109 0.63 -0.5
98,485 + 10477 mRNA_2109 0.64 -2.7
98,617 - 10477 mRNA_2109 0.83 -2.0
98,741 - -0.7
98,814 - -3.0
98,897 - -1.1
98,908 - -0.5
98,911 + -3.9
98,913 + -2.6
99,019 + -2.2
99,023 + 1.3
99,079 - -0.2
99,208 - -0.9
99,231 - -1.5
99,346 - 10478 mRNA_2110 0.15 -1.3
100,055 + 10478 mRNA_2110 0.56 -0.6
100,242 + 10478 mRNA_2110 0.66 -2.5
100,366 - 10478 mRNA_2110 0.73 -1.7
100,579 - 10478 mRNA_2110 0.85 -0.4
100,641 - 10478 mRNA_2110 0.89 -0.8
101,102 - -2.6
101,113 - -2.8
101,113 - 0.5
101,138 + -2.3
101,141 - -2.5
101,242 - -2.4
101,262 + -1.4