Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2104

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2103: 10471 - Hypothetical Protein, at 80514 to 81311 10471 mRNA_2104: 10472 - KOG0101 Molecular chaperones HSP70/HSC70, HSP70 superfamily, at 81364 to 84462 10472 mRNA_2105: 10473 - K17991 PXG peroxygenase, at 85042 to 86447 10473

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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80,372 + -0.2
80,794 - 10471 mRNA_2103 0.35 -0.4
80,825 - 10471 mRNA_2103 0.39 -1.0
80,825 - 10471 mRNA_2103 0.39 0.5
80,825 - 10471 mRNA_2103 0.39 0.1
80,960 + 10471 mRNA_2103 0.56 -0.7
80,969 + 10471 mRNA_2103 0.57 -1.2
81,096 + 10471 mRNA_2103 0.73 -1.2
81,102 - 10471 mRNA_2103 0.74 0.0
81,107 + 10471 mRNA_2103 0.74 -0.7
81,108 - 10471 mRNA_2103 0.74 -0.0
81,111 - 10471 mRNA_2103 0.75 -0.5
81,128 + 10471 mRNA_2103 0.77 -2.5
81,138 + 10471 mRNA_2103 0.78 -2.3
81,190 + 10471 mRNA_2103 0.85 -0.2
81,450 + -3.3
81,536 + -0.7
81,772 + 10472 mRNA_2104 0.13 -0.5
81,831 - 10472 mRNA_2104 0.15 -1.7
81,838 + 10472 mRNA_2104 0.15 -1.6
81,857 - 10472 mRNA_2104 0.16 1.8
81,909 - 10472 mRNA_2104 0.18 -1.5
81,991 - 10472 mRNA_2104 0.20 -1.3
82,022 + 10472 mRNA_2104 0.21 -0.6
82,238 + 10472 mRNA_2104 0.28 -2.0
82,255 - 10472 mRNA_2104 0.29 -0.7
82,420 - 10472 mRNA_2104 0.34 -0.6
82,689 - 10472 mRNA_2104 0.43 -0.5
82,752 + 10472 mRNA_2104 0.45 -2.1
82,826 + 10472 mRNA_2104 0.47 -1.1
82,874 + 10472 mRNA_2104 0.49 -0.9
83,307 + 10472 mRNA_2104 0.63 -1.6
83,433 - 10472 mRNA_2104 0.67 -2.0
83,596 + 10472 mRNA_2104 0.72 -2.9
83,750 + 10472 mRNA_2104 0.77 -2.0
83,773 - 10472 mRNA_2104 0.78 -1.6
83,842 + 10472 mRNA_2104 0.80 -1.0
84,198 + -1.9
84,324 + -2.4
84,337 - -3.7
84,393 - -1.1
84,680 + -1.2
85,054 - -3.7
85,227 + 10473 mRNA_2105 0.13 -2.3