Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2102

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2101: 10469 - K12041 SLC9A6_7, NHE6_7 solute carrier family 9 (sodium/hydrogen exchanger), member 6/7, at 73173 to 76460 10469 mRNA_2102: 10470 - SUPERFAMILY--SSF53067, at 76785 to 80345 10470 mRNA_2103: 10471 - Hypothetical Protein, at 80514 to 81311 10471

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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75,869 - 10469 mRNA_2101 0.82 -0.4
76,021 + 10469 mRNA_2101 0.87 -3.0
76,128 - 10469 mRNA_2101 0.90 -3.4
76,551 - -2.2
76,703 + -1.2
76,919 + -0.3
76,927 + -0.3
77,013 + 0.5
77,206 + 10470 mRNA_2102 0.12 0.8
77,264 + 10470 mRNA_2102 0.13 -0.4
77,337 + 10470 mRNA_2102 0.16 -1.9
77,390 + 10470 mRNA_2102 0.17 0.1
77,675 + 10470 mRNA_2102 0.25 -2.2
77,676 - 10470 mRNA_2102 0.25 -1.9
77,801 - 10470 mRNA_2102 0.29 -2.0
77,812 - 10470 mRNA_2102 0.29 -1.3
77,879 + 10470 mRNA_2102 0.31 0.2
77,953 - 10470 mRNA_2102 0.33 -1.0
77,963 - 10470 mRNA_2102 0.33 -2.7
78,023 + 10470 mRNA_2102 0.35 -0.7
78,023 + 10470 mRNA_2102 0.35 -2.0
78,026 - 10470 mRNA_2102 0.35 -2.4
78,047 + 10470 mRNA_2102 0.35 -1.8
78,355 - 10470 mRNA_2102 0.44 -2.3
78,516 + 10470 mRNA_2102 0.49 -4.0
78,517 - 10470 mRNA_2102 0.49 -1.6
78,628 + 10470 mRNA_2102 0.52 -0.8
78,668 + 10470 mRNA_2102 0.53 -1.3
78,682 - 10470 mRNA_2102 0.53 -3.2
78,951 + 10470 mRNA_2102 0.61 -2.7
79,204 + 10470 mRNA_2102 0.68 0.1
79,376 + 10470 mRNA_2102 0.73 -0.0
79,377 - 10470 mRNA_2102 0.73 -0.0
79,665 + 10470 mRNA_2102 0.81 -0.5
80,131 + 0.5
80,372 + -0.2
80,794 - 10471 mRNA_2103 0.35 -0.4
80,825 - 10471 mRNA_2103 0.39 -1.0
80,825 - 10471 mRNA_2103 0.39 0.5
80,825 - 10471 mRNA_2103 0.39 0.1
80,960 + 10471 mRNA_2103 0.56 -0.7
80,969 + 10471 mRNA_2103 0.57 -1.2
81,096 + 10471 mRNA_2103 0.73 -1.2
81,102 - 10471 mRNA_2103 0.74 0.0
81,107 + 10471 mRNA_2103 0.74 -0.7
81,108 - 10471 mRNA_2103 0.74 -0.0
81,111 - 10471 mRNA_2103 0.75 -0.5
81,128 + 10471 mRNA_2103 0.77 -2.5
81,138 + 10471 mRNA_2103 0.78 -2.3
81,190 + 10471 mRNA_2103 0.85 -0.2