Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2093

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2092: 10460 - K20457 DHFS dihydrofolate synthase, at 52629 to 54149 10460 mRNA_2093: 10461 - K10967 KTR1_3 alpha 1,2-mannosyltransferase, at 54504 to 56604 10461 mRNA_2094: 10462 - Hypothetical Protein, at 56857 to 57476 10462

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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54,152 - -2.4
54,291 + -0.7
54,293 + -1.2
54,373 - -3.2
54,412 - -0.9
54,418 - -0.6
54,437 + -1.5
54,446 - -0.7
54,565 - -2.7
54,580 - -1.2
54,586 - -2.1
54,588 - 0.2
54,618 + -2.3
54,720 + 10461 mRNA_2093 0.10 -1.8
54,724 - 10461 mRNA_2093 0.10 2.3
54,736 - 10461 mRNA_2093 0.11 -0.8
54,742 + 10461 mRNA_2093 0.11 -0.7
54,991 - 10461 mRNA_2093 0.23 0.4
54,994 + 10461 mRNA_2093 0.23 -0.4
55,000 + 10461 mRNA_2093 0.24 -0.4
55,582 - 10461 mRNA_2093 0.51 -3.2
55,725 + 10461 mRNA_2093 0.58 -1.0
55,728 - 10461 mRNA_2093 0.58 -1.4
55,831 + 10461 mRNA_2093 0.63 -0.1
55,833 - 10461 mRNA_2093 0.63 0.7
55,852 + 10461 mRNA_2093 0.64 -1.8
55,856 + 10461 mRNA_2093 0.64 1.4
55,875 + 10461 mRNA_2093 0.65 -2.5
55,993 + 10461 mRNA_2093 0.71 -1.4
56,032 + 10461 mRNA_2093 0.73 -0.7
56,183 + 10461 mRNA_2093 0.80 -1.5
56,293 + 10461 mRNA_2093 0.85 -0.8
56,333 - 10461 mRNA_2093 0.87 -1.9
56,456 - -0.5
56,484 - -0.4
56,568 - -1.8
56,622 + -2.1
56,735 - 1.7
56,757 - 0.4
56,758 + -1.6
56,760 + -1.8
56,764 - -0.1
56,766 - -2.2
56,776 + 0.3
56,776 - -2.1
56,786 - -1.6
56,803 + -2.6
56,926 + 10462 mRNA_2094 0.11 -4.3
56,933 - 10462 mRNA_2094 0.12 -0.3
57,058 - 10462 mRNA_2094 0.32 -1.2
57,062 - 10462 mRNA_2094 0.33 -2.1
57,200 - 10462 mRNA_2094 0.55 -0.7