Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2090

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2089: 10457 - KOG0637 Sucrose transporter and related proteins, at 45367 to 47923 10457 mRNA_2090: 10458 - K09104 K09104 bHLH factor, other, at 48252 to 49306 10458 mRNA_2091: 10459 - KOG0254 Predicted transporter (major facilitator superfamily), at 49502 to 51805 10459

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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47,449 - 10457 mRNA_2089 0.81 0.1
47,683 - -1.1
47,847 + -1.4
48,118 - -3.8
48,127 - -2.3
48,127 + -1.0
48,133 - 1.1
48,133 - -1.6
48,163 - -2.4
48,165 - -1.5
48,172 + 1.0
48,183 - -0.1
48,234 + -1.8
48,265 + -2.1
48,461 + 10458 mRNA_2090 0.20 -1.7
48,474 + 10458 mRNA_2090 0.21 -0.7
48,648 - 10458 mRNA_2090 0.38 -0.9
49,170 + 10458 mRNA_2090 0.87 -1.2
49,320 + 1.5
49,459 - -1.6
49,499 + -1.6
49,512 + -1.7
49,576 + 0.0
49,649 - -1.8
49,948 - 10459 mRNA_2091 0.19 -3.3
49,989 + 10459 mRNA_2091 0.21 0.8
50,196 + 10459 mRNA_2091 0.30 -3.2