Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2087

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2086: 10454 - Hypothetical Protein, at 40220 to 41311 10454 mRNA_2087: 10455 - K19792 FET4 low-affinity ferrous iron transport protein, at 41484 to 43178 10455 mRNA_2088: 10456 - K11539 CBR4 carbonyl reductase 4, at 43873 to 45155 10456

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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40,695 + 10454 mRNA_2086 0.43 -2.4
40,700 - 10454 mRNA_2086 0.44 -1.4
40,718 - 10454 mRNA_2086 0.46 -1.1
40,718 + 10454 mRNA_2086 0.46 -0.5
40,810 + 10454 mRNA_2086 0.54 -2.1
40,839 + 10454 mRNA_2086 0.57 -2.7
40,840 + 10454 mRNA_2086 0.57 -2.4
40,844 - 10454 mRNA_2086 0.57 -0.8
40,853 - 10454 mRNA_2086 0.58 0.4
40,997 + 10454 mRNA_2086 0.71 -0.9
40,999 + 10454 mRNA_2086 0.71 -1.4
41,003 - 10454 mRNA_2086 0.72 -1.0
41,014 - 10454 mRNA_2086 0.73 -0.8
41,041 + 10454 mRNA_2086 0.75 0.3
41,045 - 10454 mRNA_2086 0.76 -2.6
41,055 - 10454 mRNA_2086 0.76 -2.1
41,136 - 10454 mRNA_2086 0.84 -1.0
41,145 - 10454 mRNA_2086 0.85 -0.9
41,173 + 10454 mRNA_2086 0.87 -2.7
41,360 - -0.6
42,170 + 10455 mRNA_2087 0.40 -2.6
42,748 - 10455 mRNA_2087 0.75 -0.8
42,748 - 10455 mRNA_2087 0.75 -1.0
42,815 - 10455 mRNA_2087 0.79 -1.1
42,857 + 10455 mRNA_2087 0.81 -3.3
43,191 + 1.0
43,353 - -2.3
43,451 - 1.1
43,484 - -1.3
43,487 - -0.3
43,489 + -1.7
43,494 + -2.7
43,498 + -0.4
43,566 - -1.3
43,590 - -2.6
43,602 - -3.0
43,639 - -2.3
43,744 - -1.7
43,752 + -2.0
43,770 + 1.2
43,770 + -0.3
43,770 + -2.1
43,787 + -0.2
43,796 + -0.0
43,898 - -1.0
43,916 - -1.0
43,941 + -1.3
44,014 - 10456 mRNA_2088 0.11 -0.6