Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2078

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2077: 10445 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 19100 to 20228 10445 mRNA_2078: 10446 - K10773 NTH endonuclease III, at 20466 to 22211 10446 mRNA_2079: 10447 - Hypothetical Protein, at 22579 to 23856 10447

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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19,482 - 10445 mRNA_2077 0.34 -0.5
19,649 - 10445 mRNA_2077 0.49 -1.9
19,663 + 10445 mRNA_2077 0.50 -1.4
19,676 - 10445 mRNA_2077 0.51 1.2
19,761 + 10445 mRNA_2077 0.59 -1.7
19,762 + 10445 mRNA_2077 0.59 -2.3
19,949 - 10445 mRNA_2077 0.75 -1.0
20,094 - 10445 mRNA_2077 0.88 -1.2
20,094 - 10445 mRNA_2077 0.88 -0.7
20,100 + 10445 mRNA_2077 0.89 -1.2
20,100 + 10445 mRNA_2077 0.89 -1.7
20,306 + 0.4
20,419 + -2.3
20,794 - 10446 mRNA_2078 0.19 -1.9
20,866 - 10446 mRNA_2078 0.23 -1.8
21,016 - 10446 mRNA_2078 0.32 -0.5
21,051 + 10446 mRNA_2078 0.34 -3.5
21,120 - 10446 mRNA_2078 0.37 -2.1
21,148 - 10446 mRNA_2078 0.39 -2.7
21,401 - 10446 mRNA_2078 0.54 -1.3
21,857 + 10446 mRNA_2078 0.80 -1.3
21,860 + 10446 mRNA_2078 0.80 -0.9
21,932 + 10446 mRNA_2078 0.84 -1.0
22,332 + -2.6
22,338 - -1.6
22,341 + -2.4
22,342 - 0.7
22,348 + -3.0
22,349 + -0.1
22,353 + -1.8
22,358 + -0.6
22,366 - 0.1
22,486 + -2.4
22,490 + -0.4
22,512 - -0.7
22,530 + -0.7
22,589 + -3.1
22,777 - 10447 mRNA_2079 0.15 -0.7
22,817 - 10447 mRNA_2079 0.19 -0.2
22,835 - 10447 mRNA_2079 0.20 -1.1