Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2070

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2069: 10437 - K03039 PSMD13, RPN9 26S proteasome regulatory subunit N9, at 1235 to 2339 10437 mRNA_2070: 10438 - Hypothetical Protein, at 2600 to 2887 10438 mRNA_2071: 10439 - HMMPfam-Chromate transporter-PF02417, at 3478 to 5448 10439

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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2,482 + -1.9
2,499 - -0.4
2,500 + -1.3
2,502 + -0.7
2,508 + -1.3
2,512 - -1.3
2,513 + -2.7
2,514 - -0.3
2,521 - -2.4
2,522 + -0.1
2,523 - -1.4
2,523 - -0.0
2,638 - 10438 mRNA_2070 0.13 -1.6
2,667 + 10438 mRNA_2070 0.23 -0.8
2,670 - 10438 mRNA_2070 0.24 -1.3
2,763 - 10438 mRNA_2070 0.57 -1.3
2,780 - 10438 mRNA_2070 0.62 1.0
2,798 - 10438 mRNA_2070 0.69 0.2
2,805 - 10438 mRNA_2070 0.71 -1.1
2,811 + 10438 mRNA_2070 0.73 -0.2
3,039 - -1.2
3,248 + -2.2
3,318 - -1.9
3,366 + -0.6
3,378 - -2.1
3,380 - -3.1