Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2067

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2066: 10434 - SUPERFAMILY--SSF52047, at 867605 to 868583 10434 mRNA_2067: 10435 - BLAST cell morphogenesis protein [Grosmannia clavigera ..., at 868963 to 869751 10435 mRNA_2068: 10436 - Hypothetical Protein, at 869923 to 870194 10436

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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867,991 - 10434 mRNA_2066 0.39 -0.1
868,059 - 10434 mRNA_2066 0.46 1.0
868,066 + 10434 mRNA_2066 0.47 -1.6
868,214 + 10434 mRNA_2066 0.62 -1.4
868,253 - 10434 mRNA_2066 0.66 0.1
868,298 - 10434 mRNA_2066 0.71 -0.3
868,342 - 10434 mRNA_2066 0.75 -2.0
868,390 - 10434 mRNA_2066 0.80 2.0
868,493 - -1.3
868,501 + 0.3
868,534 + 0.8
868,534 + -0.6
868,555 - -0.6
868,625 - -1.1
868,626 - -0.8
868,645 - 0.0
868,712 - -1.6
868,813 - -1.8
868,875 - -0.1
868,932 - -0.8
868,957 - -3.0
868,974 + -1.7
868,980 - -1.6
868,983 - 0.8
869,027 - -2.7
869,097 + 10435 mRNA_2067 0.17 0.1
869,174 + 10435 mRNA_2067 0.27 0.1
869,210 - 10435 mRNA_2067 0.31 -1.5
869,232 + 10435 mRNA_2067 0.34 -2.4
869,239 - 10435 mRNA_2067 0.35 -1.2
869,248 - 10435 mRNA_2067 0.36 -0.5
869,360 - 10435 mRNA_2067 0.50 -0.9
869,379 - 10435 mRNA_2067 0.53 -0.2
869,379 - 10435 mRNA_2067 0.53 -0.7
869,385 + 10435 mRNA_2067 0.53 0.3
869,405 - 10435 mRNA_2067 0.56 -0.2
869,405 - 10435 mRNA_2067 0.56 -1.8
869,406 + 10435 mRNA_2067 0.56 -0.1
869,493 - 10435 mRNA_2067 0.67 -1.2
869,524 - 10435 mRNA_2067 0.71 0.5
869,540 - 10435 mRNA_2067 0.73 -1.2
869,591 - 10435 mRNA_2067 0.80 -0.7
869,620 - 10435 mRNA_2067 0.83 -2.7
869,624 - 10435 mRNA_2067 0.84 -1.0
869,629 - 10435 mRNA_2067 0.84 -1.2
869,641 - 10435 mRNA_2067 0.86 -0.0
869,651 - 10435 mRNA_2067 0.87 -1.9
869,689 - -1.9
869,714 + -2.3
869,721 - 0.4
869,758 - 0.4
869,758 + -1.2
869,771 - -3.1
869,775 - -0.4
869,795 - -1.1
869,864 - -0.1
869,866 - -0.7
869,877 - -1.5
869,881 - -1.9
869,903 - -2.5
869,904 - -2.2
869,908 - -5.1
869,923 - 0.1
869,942 - -3.5
869,943 - 0.3
869,948 - -1.2
869,964 + 10436 mRNA_2068 0.15 -0.7
869,966 - 10436 mRNA_2068 0.16 -1.6
869,990 + 10436 mRNA_2068 0.25 -3.8
869,990 + 10436 mRNA_2068 0.25 -1.9
869,990 - 10436 mRNA_2068 0.25 -3.6
870,004 - 10436 mRNA_2068 0.30 -1.9
870,012 + 10436 mRNA_2068 0.33 1.0
870,033 - 10436 mRNA_2068 0.40 -0.9
870,035 - 10436 mRNA_2068 0.41 -1.8
870,042 - 10436 mRNA_2068 0.44 -3.4
870,044 + 10436 mRNA_2068 0.44 0.1
870,054 + 10436 mRNA_2068 0.48 -4.4
870,056 - 10436 mRNA_2068 0.49 -2.4
870,058 - 10436 mRNA_2068 0.50 0.2
870,061 - 10436 mRNA_2068 0.51 -3.2
870,070 - 10436 mRNA_2068 0.54 -1.1
870,086 - 10436 mRNA_2068 0.60 -1.0
870,086 - 10436 mRNA_2068 0.60 -3.4
870,093 + 10436 mRNA_2068 0.62 -2.4
870,107 - 10436 mRNA_2068 0.68 0.5
870,112 + 10436 mRNA_2068 0.69 -1.5
870,127 - 10436 mRNA_2068 0.75 1.6
870,145 - 10436 mRNA_2068 0.82 -0.8
870,148 - 10436 mRNA_2068 0.83 -1.7
870,158 - 10436 mRNA_2068 0.86 -2.5
870,171 + -0.8
870,172 - -2.1
870,172 - -1.7
870,172 - -1.9
870,172 - 0.2
870,173 + -0.5
870,173 + -1.9
870,176 - -0.4
870,180 - -2.4
870,192 - -1.9
870,205 - -2.8
870,210 - -2.2
870,210 - 0.4
870,210 - -0.3
870,210 - -2.9
870,210 - 0.9