Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2052

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2051: 10419 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 836699 to 837795 10419 mRNA_2052: 10420 - KOG1399 Flavin-containing monooxygenase, at 838709 to 841749 10420 mRNA_2053: 10421 - KOG2450 Aldehyde dehydrogenase, at 842019 to 844467 10421

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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837,827 - -1.8
837,959 - -2.5
838,000 - -1.4
838,130 + -1.9
838,279 - -1.5
838,309 + -0.7
838,414 + -0.6
838,483 + -4.1
838,535 - 0.3
838,538 + 1.3
838,568 - -2.5
838,569 + 0.7
838,570 + -0.4
838,571 + -1.0
838,571 + -1.2
838,572 + -3.9
838,579 + -0.7
838,580 + -2.9
838,583 + -0.3
838,587 + -0.5
838,595 + -0.5
838,596 + -1.9
838,597 + -0.4
838,760 + 0.5
838,909 + -2.2
839,087 + 10420 mRNA_2052 0.12 -1.5
839,170 + 10420 mRNA_2052 0.15 -0.2
839,172 - 10420 mRNA_2052 0.15 -1.5
839,326 + 10420 mRNA_2052 0.20 -1.7
839,443 - 10420 mRNA_2052 0.24 -1.4
839,663 + 10420 mRNA_2052 0.31 -1.1
839,686 - 10420 mRNA_2052 0.32 -1.7
839,693 + 10420 mRNA_2052 0.32 -1.2
839,794 + 10420 mRNA_2052 0.36 -1.5
840,073 + 10420 mRNA_2052 0.45 -0.2
840,229 - 10420 mRNA_2052 0.50 -2.1
840,502 + 10420 mRNA_2052 0.59 -1.1
840,564 - 10420 mRNA_2052 0.61 0.5
840,753 - 10420 mRNA_2052 0.67 0.6
840,789 - 10420 mRNA_2052 0.68 -1.1
840,791 + 10420 mRNA_2052 0.68 -0.4
841,042 + 10420 mRNA_2052 0.77 -2.8
841,219 - 10420 mRNA_2052 0.83 -1.8
841,221 + 10420 mRNA_2052 0.83 0.2
841,411 - 10420 mRNA_2052 0.89 -1.7
841,483 + -2.3
841,751 + 0.3
841,808 - -2.4
841,949 + -1.5
841,971 - -2.4
842,060 - 1.3
842,112 + -0.5
842,120 - -0.6
842,257 - -2.8
842,523 - 10421 mRNA_2053 0.21 -1.8
842,523 - 10421 mRNA_2053 0.21 -1.2
842,669 - 10421 mRNA_2053 0.27 -1.3
842,725 - 10421 mRNA_2053 0.29 -1.6