Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2039

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2038: 10406 - Hypothetical Protein, at 807338 to 808315 10406 mRNA_2039: 10407 - KOG2895 Uncharacterized conserved protein, at 808552 to 810897 10407 mRNA_2040: 10408 - K11729 ACAD10 acyl-CoA dehydrogenase family member 10, at 811231 to 813728 10408

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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807,559 - 10406 mRNA_2038 0.23 -4.3
807,687 + 10406 mRNA_2038 0.36 0.2
808,295 + -0.5
808,329 + -3.2
808,335 - -0.2
808,900 + 10407 mRNA_2039 0.15 -1.8
809,927 + 10407 mRNA_2039 0.59 -2.6
810,455 - 10407 mRNA_2039 0.81 -0.5
810,465 + 10407 mRNA_2039 0.82 -3.6
810,509 - 10407 mRNA_2039 0.83 -2.1
810,735 - -0.8
810,817 + 0.0
811,068 + -2.2
811,081 + -0.6
811,081 + -1.3
811,084 - -1.6
811,116 - -0.8
811,117 - -3.7
811,138 - -1.4
811,140 + -2.5
811,140 - -1.8
811,225 - -0.7
811,247 + -1.3
811,269 + -1.3
811,547 - 10408 mRNA_2040 0.13 -3.7
811,549 + 10408 mRNA_2040 0.13 0.2
811,553 + 10408 mRNA_2040 0.13 -1.6
811,842 - 10408 mRNA_2040 0.24 -0.9
811,845 + 10408 mRNA_2040 0.25 -2.1