Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2021

Experiments: 40 hrs No Buoyancy Separation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2020: 10388 - KOG1703 Adaptor protein Enigma and related PDZ-LIM proteins, at 762718 to 765022 10388 mRNA_2021: 10389 - BLAST deacetylase-like protein [Drechmeria coniospora], at 765421 to 766356 10389 mRNA_2022: 10390 - BLAST KLLA0F09339p [Kluyveromyces lactis], at 766628 to 767371 10390

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
remove
764,689 - 10388 mRNA_2020 0.86 -1.8
764,737 + 10388 mRNA_2020 0.88 -2.2
764,919 + -2.1
764,921 + -0.3
764,924 - -1.9
764,931 - -1.2
764,945 + -1.7
764,964 + -1.9
765,085 - -0.7
765,092 + -0.0
765,096 - -0.9
765,400 + 0.6
765,403 + -0.6
765,509 - -2.1
765,699 - 10389 mRNA_2021 0.30 0.8
766,253 - 10389 mRNA_2021 0.89 -1.2
766,278 - -0.2
766,308 + -2.1
766,399 - -3.1
766,399 + -1.6
766,400 - -3.8
766,402 - -0.5
766,545 - -0.1
766,710 - 10390 mRNA_2022 0.11 1.0
766,725 - 10390 mRNA_2022 0.13 -0.4
766,731 + 10390 mRNA_2022 0.14 0.7
766,850 + 10390 mRNA_2022 0.30 -1.5
766,988 - 10390 mRNA_2022 0.48 -1.6
767,181 - 10390 mRNA_2022 0.74 0.7
767,274 + 10390 mRNA_2022 0.87 -1.6