Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2017

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2016: 10384 - HMMPfam-Glycosyl transferase family group 2-PF13632,SUPERFAMILY--SSF53448, at 748205 to 751738 10384 mRNA_2017: 10385 - K12600 SKI3, TTC37 superkiller protein 3, at 752495 to 757859 10385 mRNA_2018: 10386 - K09554 CDC37 cell division cycle protein 37, at 758563 to 760344 10386

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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751,596 + 0.6
751,605 + -0.6
751,657 - -0.5
751,683 - -2.1
751,785 + -2.4
751,962 - -0.9
752,039 - -0.3
752,134 + -2.6
752,208 - -0.3
752,333 + -2.0
752,351 - 0.3
752,371 - -1.2
752,533 + -1.0
752,558 - -0.3
752,621 - 1.4
752,704 + -1.3
752,729 + -0.6
752,820 - -0.3
752,823 - -1.9
753,529 - 10385 mRNA_2017 0.19 -1.1
754,120 + 10385 mRNA_2017 0.30 1.1
755,345 - 10385 mRNA_2017 0.53 0.5
755,454 - 10385 mRNA_2017 0.55 -0.2
755,720 + 10385 mRNA_2017 0.60 -0.9
755,844 - 10385 mRNA_2017 0.62 -3.5
756,220 - 10385 mRNA_2017 0.69 1.0
756,227 + 10385 mRNA_2017 0.70 0.1
757,759 + -0.2
757,816 - -0.0
757,879 + 0.9
757,883 - 1.0
757,911 + -2.0
758,042 - 0.1
758,055 + 0.6
758,187 + -0.1
758,196 + -1.9
758,205 - -1.9
758,214 + -2.9
758,335 - 0.6