Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2012

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2011: 10379 - KOG2533 Permease of the major facilitator superfamily, at 737348 to 740033 10379 mRNA_2012: 10380 - K00681 ggt gamma-glutamyltranspeptidase / glutathione hydrolase, at 740635 to 742993 10380 mRNA_2013: 10381 - SUPERFAMILY--SSF49899, at 743258 to 744708 10381

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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739,685 + 10379 mRNA_2011 0.87 0.5
739,920 + -2.0
739,924 - -0.5
739,978 - -1.6
740,260 - -0.2
740,261 + -1.3
740,280 - -1.0
740,430 - 1.7
740,433 + -0.3
740,439 - -2.6
740,439 + -2.0
740,443 + -1.0
740,449 + -0.3
740,449 + 0.2
740,454 + 0.7
740,459 + -0.6
740,498 - -1.5
740,504 + -2.4
740,533 + 1.4
740,540 + 0.9
740,558 + -3.3
740,559 + 0.0
740,566 - -2.6
740,569 - -2.3
740,570 - -2.7
740,570 - -0.0
740,571 + -2.2
740,582 + -2.0
740,582 + -2.1
740,612 + 0.8
740,665 + -1.9
740,730 - -1.3
741,012 + 10380 mRNA_2012 0.16 0.1
741,304 - 10380 mRNA_2012 0.28 -0.3
741,309 + 10380 mRNA_2012 0.29 -2.0
741,405 - 10380 mRNA_2012 0.33 -1.4
741,480 + 10380 mRNA_2012 0.36 -2.0
741,754 + 10380 mRNA_2012 0.47 -0.9
741,786 + 10380 mRNA_2012 0.49 -0.4
741,900 + 10380 mRNA_2012 0.54 2.6
742,077 - 10380 mRNA_2012 0.61 -1.6
742,310 + 10380 mRNA_2012 0.71 -1.6
742,610 + 10380 mRNA_2012 0.84 -1.9
742,852 - -0.7
742,960 + -0.5
743,120 + -1.6
743,382 - -1.2
743,503 - 10381 mRNA_2013 0.17 -0.7