Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2010

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2009: 10377 - BLAST ankyrin [Cenococcum geophilum 1.58], at 733101 to 734076 10377 mRNA_2010: 10378 - KOG2533 Permease of the major facilitator superfamily, at 734428 to 736399 10378 mRNA_2011: 10379 - KOG2533 Permease of the major facilitator superfamily, at 737348 to 740033 10379

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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733,634 + 10377 mRNA_2009 0.55 -0.6
733,681 - 10377 mRNA_2009 0.59 0.7
733,788 - 10377 mRNA_2009 0.70 -2.5
734,465 - -3.6
734,623 - 1.0
734,692 - 10378 mRNA_2010 0.13 -1.5
735,394 + 10378 mRNA_2010 0.49 -1.9
735,534 - 10378 mRNA_2010 0.56 1.4
735,695 + 10378 mRNA_2010 0.64 -0.2
735,827 - 10378 mRNA_2010 0.71 -2.0
735,956 + 10378 mRNA_2010 0.77 -1.1
736,290 - -0.9
736,663 + -2.7
736,849 + -0.3
737,118 - -3.5
737,121 + -3.2
737,235 + -0.9