Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2007

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2006: 10374 - K00380 cysJ sulfite reductase (NADPH) flavoprotein alpha-component, at 724216 to 728973 10374 mRNA_2007: 10375 - K15331 TRMT2B, TRM2 tRNA (uracil-5-)-methyltransferase, at 729212 to 731398 10375 mRNA_2008: 10376 - K02929 RP-L44e, RPL44 large subunit ribosomal protein L44e, at 731652 to 732253 10376

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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728,685 + -0.8
729,222 - -0.0
729,249 + 0.4
729,263 + -1.2
729,315 + -1.3
729,355 - 1.0
729,459 + 10375 mRNA_2007 0.11 0.6
729,763 + 10375 mRNA_2007 0.25 -2.7
729,888 - 10375 mRNA_2007 0.31 -2.5
730,122 - 10375 mRNA_2007 0.42 -0.1
730,181 + 10375 mRNA_2007 0.44 -0.4
730,322 + 10375 mRNA_2007 0.51 -1.0
730,323 + 10375 mRNA_2007 0.51 -1.3
730,663 + 10375 mRNA_2007 0.66 -1.9
730,898 + 10375 mRNA_2007 0.77 -0.7
731,197 + 0.1
731,252 - -2.9
731,360 + -1.9
731,361 - -0.0
731,404 - -1.5
731,491 - -1.4
731,505 - -2.0
731,515 + 0.2
731,533 + -1.0