Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2005

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2004: 10372 - Hypothetical Protein, at 718267 to 719987 10372 mRNA_2005: 10373 - K08286 E2.7.11.- protein-serine/threonine kinase, at 720750 to 723688 10373 mRNA_2006: 10374 - K00380 cysJ sulfite reductase (NADPH) flavoprotein alpha-component, at 724216 to 728973 10374

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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719,842 - 0.8
720,536 - -2.1
720,891 + -3.3
721,153 - 10373 mRNA_2005 0.14 1.2
721,868 - 10373 mRNA_2005 0.38 -0.0
722,315 - 10373 mRNA_2005 0.53 -2.0
723,328 - 10373 mRNA_2005 0.88 -0.4
723,454 + -0.8
723,485 - -4.0
723,496 - -1.0
723,500 + 1.1
723,594 - -2.6
723,628 + -2.2
723,648 - -2.7
723,650 + 1.6
723,655 + -0.2
723,755 - -0.9
723,760 + 0.2
723,768 - -2.6
723,768 - -0.5
723,777 - -2.0
723,778 + -0.4
723,781 + -2.0
723,829 + -1.7
723,838 + -1.5
723,843 - -0.9
723,852 + -3.5
723,862 + -2.1
723,863 - -1.1
723,993 - -1.0
723,997 - -1.2
724,061 + -2.2
724,068 - -1.0
724,073 + -0.5
724,101 + -2.3
724,111 - -0.3
724,195 - -0.1
724,208 - -2.6
724,213 - 0.2
724,226 - -1.2
724,229 + 1.4
724,233 - -1.6
724,235 + 0.8
724,245 - -1.0
724,247 - 0.4
724,518 - -1.5
724,547 + -1.8
724,575 + -1.6