Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2003

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2002: 10370 - HMMPfam-NAD(P)-binding Rossmann-like domain-PF13450,SUPERFAMILY--SSF51971, at 712088 to 714509 10370 mRNA_2003: 10371 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 714669 to 717655 10371 mRNA_2004: 10372 - Hypothetical Protein, at 718267 to 719987 10372

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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714,556 - -3.0
714,566 - -1.4
714,571 - -0.6
714,575 - -2.9
714,577 + -1.4
714,578 + -0.7
714,580 - -2.0
714,580 - 0.7
714,580 - -1.1
714,580 - 0.4
714,584 - 1.5
714,588 + -2.3
714,601 - -1.3
714,602 + -1.8
714,607 + 0.3
714,643 + -2.8
714,644 + -0.2
714,645 + -2.0
714,649 - -0.9
714,662 + -2.9
714,664 - -1.6
714,671 - 0.2
714,679 - -3.7
714,770 + -2.8
714,776 - -0.4
714,795 + -1.6
715,485 + 10371 mRNA_2003 0.27 -1.3
715,510 + 10371 mRNA_2003 0.28 -3.2
715,620 - 10371 mRNA_2003 0.32 -2.2
715,635 - 10371 mRNA_2003 0.32 -2.2
715,896 + 10371 mRNA_2003 0.41 -0.3
715,925 - 10371 mRNA_2003 0.42 1.0
715,926 + 10371 mRNA_2003 0.42 -1.9
715,929 + 10371 mRNA_2003 0.42 -1.9
716,215 + 10371 mRNA_2003 0.52 -0.9
716,645 - 10371 mRNA_2003 0.66 -4.0
717,067 - 10371 mRNA_2003 0.80 -0.5
717,224 - 10371 mRNA_2003 0.86 -2.6
717,361 - -1.2
717,806 - -2.4
717,947 - -0.7
717,962 + -1.1
717,971 + -0.4
718,113 - -1.7
718,130 + 0.7
718,424 + -0.9