Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2000

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1999: 10367 - Hypothetical Protein, at 706788 to 707404 10367 mRNA_2000: 10368 - K09650 PARL, PSARL, PCP1 rhomboid-like protein, at 707641 to 708923 10368 mRNA_2001: 10369 - Hypothetical Protein, at 709037 to 710403 10369

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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706,849 + -1.2
706,897 + 10367 mRNA_1999 0.18 0.1
706,914 + 10367 mRNA_1999 0.20 1.8
706,916 + 10367 mRNA_1999 0.21 -0.7
707,071 + 10367 mRNA_1999 0.46 -1.2
707,347 + -2.6
707,572 + -2.5
707,645 + 1.6
707,941 + 10368 mRNA_2000 0.23 -1.8
708,062 - 10368 mRNA_2000 0.33 -2.7
708,079 - 10368 mRNA_2000 0.34 -1.2
708,213 + 10368 mRNA_2000 0.45 -0.1
708,247 + 10368 mRNA_2000 0.47 -2.4
708,508 + 10368 mRNA_2000 0.68 -0.4
708,514 + 10368 mRNA_2000 0.68 0.1
708,615 - 10368 mRNA_2000 0.76 -0.8
708,638 + 10368 mRNA_2000 0.78 -1.3
708,650 - 10368 mRNA_2000 0.79 -0.8
708,654 - 10368 mRNA_2000 0.79 -0.2
708,662 - 10368 mRNA_2000 0.80 -0.2
708,812 + -1.9
708,828 + -0.9
708,830 + -2.4
708,947 - -0.5
708,968 + -0.6
708,984 + -1.0
709,074 - -3.5
709,098 + -1.7
709,113 - -1.6
709,115 + 0.6
709,117 - -0.4
709,123 - -2.3
709,394 - 10369 mRNA_2001 0.26 -2.3