Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1999

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1998: 10366 - K08869 ADCK, ABC1 aarF domain-containing kinase, at 704179 to 706336 10366 mRNA_1999: 10367 - Hypothetical Protein, at 706788 to 707404 10367 mRNA_2000: 10368 - K09650 PARL, PSARL, PCP1 rhomboid-like protein, at 707641 to 708923 10368

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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705,920 - 10366 mRNA_1998 0.81 -1.9
706,128 - -4.3
706,447 + 0.6
706,849 + -1.2
706,897 + 10367 mRNA_1999 0.18 0.1
706,914 + 10367 mRNA_1999 0.20 1.8
706,916 + 10367 mRNA_1999 0.21 -0.7
707,071 + 10367 mRNA_1999 0.46 -1.2
707,347 + -2.6
707,572 + -2.5
707,645 + 1.6
707,941 + 10368 mRNA_2000 0.23 -1.8
708,062 - 10368 mRNA_2000 0.33 -2.7
708,079 - 10368 mRNA_2000 0.34 -1.2
708,213 + 10368 mRNA_2000 0.45 -0.1
708,247 + 10368 mRNA_2000 0.47 -2.4