Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1978

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1977: 10345 - HMMPfam-Eukaryotic initiation factor 4E-PF01652,SUPERFAMILY--SSF55418, at 656305 to 657635 10345 mRNA_1978: 10346 - K14409 SMG7, EST1C protein SMG7, at 657847 to 661571 10346 mRNA_1979: 10347 - KOG2362 Uncharacterized Fe-S protein, at 661978 to 663393 10347

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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657,715 + -0.6
657,974 - -0.1
657,975 + -2.3
657,991 + -1.2
657,995 - 0.4
657,995 + -2.7
658,346 + 10346 mRNA_1978 0.13 -1.5
658,733 + 10346 mRNA_1978 0.24 -0.6
658,870 + 10346 mRNA_1978 0.27 -2.6
658,870 + 10346 mRNA_1978 0.27 -0.6
658,878 - 10346 mRNA_1978 0.28 -0.1
659,311 + 10346 mRNA_1978 0.39 -1.8
659,601 - 10346 mRNA_1978 0.47 -0.3
659,909 - 10346 mRNA_1978 0.55 0.2
660,221 - 10346 mRNA_1978 0.64 -1.4
660,313 + 10346 mRNA_1978 0.66 -0.8
660,327 + 10346 mRNA_1978 0.67 -1.3
660,350 + 10346 mRNA_1978 0.67 -0.9
660,453 + 10346 mRNA_1978 0.70 -2.4
660,523 - 10346 mRNA_1978 0.72 -1.0
660,626 + 10346 mRNA_1978 0.75 -1.0
660,738 + 10346 mRNA_1978 0.78 -3.4
661,066 - 10346 mRNA_1978 0.86 -0.3
661,190 + 10346 mRNA_1978 0.90 0.5
662,067 + -2.5
662,110 + -2.6
662,254 - 10347 mRNA_1979 0.19 -2.1